Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05120 522 / 0 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05130 500 / 5e-177 ATENT4 equilibrative nucleoside transporter 4 (.1) AT4G05140 499 / 2e-176 Nucleoside transporter family protein (.1) AT4G05110 494 / 2e-174 ATENT6 equilibrative nucleoside transporter 6 (.1) AT3G09990 462 / 4e-162 Nucleoside transporter family protein (.1) AT1G61630 451 / 1e-157 ATENT7 equilibrative nucleoside transporter 7 (.1) AT1G70330 158 / 9e-44 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 148 / 2e-40 Nucleoside transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018523 [exp] 764 / 0 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10002589 [exp] 511 / 0 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018413 [exp] 506 / 2e-178 AT4G05120 606 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 461 / 3e-160 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 342 / 6e-115 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10030104 [exp] 146 / 1e-39 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10029162 [exp] 142 / 4e-38 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10013002 [exp] 135 / 1e-35 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10002590 [exp] 97 / 1e-24 AT4G05130 97 / 2e-25 equilibrative nucleoside transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118400 [exp] 580 / 0 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 533 / 0 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032300 [exp] 513 / 0 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 473 / 6e-166 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 469 / 7e-165 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.012G058900 [exp] 147 / 7e-40 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.006G068100 [exp] 134 / 2e-35 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130000 [exp] 130 / 6e-34 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 78 / 1e-16 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Lus10039741 pacid=23165082 polypeptide=Lus10039741 locus=Lus10039741.g ID=Lus10039741.BGIv1.0 annot-version=v1.0 ATGGAACCCAACGATGGCAATGCAGCTAATCCCAACATGGAGGGGAAATACGCTGCAGTAATCGTGTGTTGGATACTCGGAAACGGATGCCTCTTCTCAT GGAACAGTATGCTCACAATACAAGATTACTATGTCCCCCTCTTCCCGGACTATCACCCGTCTCGAGTCCTGACACTCGTGTACCAGCCCTGCGCGGTTAT AACGATCGCGATTCTTGCATACAGAGAAGCTAAAATCAATACCAGGAACAGGAACTTGCTTGGTTATTCACTTTTCTTCATCAGCTCTCTTGCTGTTCTT GTTTTGGATATAGCAACATCAGGAAGAGGTGGAATTGGAACATTCATAGGAATTTGTATAATCAGTGGATTATTCGGAGTTGCAGATGCTCATGTACAAG GTGGTATGGTTGGAGATCTCTCCTTTATGCATCCTATCTTCATCCAGTCGTTCCTCGCGGGACTAGCAGCATCAGGAGCTCTAACATCAGCACTGAGGCT GATCACTAGAGCAGCATTCGAGAACACGAAGAACGGTCTTCGAAAGGGAGCTCTTTTATTCTTTGCCATCTCCTCGTTTTTCGAGCTTGTATGTCTCGTT CTATACGCTTTCGCGTTCCCCAAGCTGCCCGTGGTGAAGTTCTATCGCGCTAAGGCTGCCACCGAAGGGTCCAAGACTGTTGCTTCTGATCTTGCTGCTG GTGGACTCCAAACCTTACCTGACCAAGAGGCGGTTGAGCAAGCGAAAAACGTGACGAGGTTCAGCAACAGAGAGTTGTTGATGCAGAATGCTGACTATGT GATCGACATCTACTTGATATATGCGCTGACATTGTCGATTTTCCCAGGTTTCTTGTCTGAGGACACTGGATCACACGGTTTAGGAACATGGTATGCACTT GTTCTGATTGCAATGTACAATGTCTGGGACCTGATCGGAAGGTACATCCCGCTGGCGAACTTCGCGAAGTTGGAGTCCCGTAAGGGTCTCACCGGAGCAG TTCTATCGCGGTTCTTGCTGATCCCGGCATTTTACTTCACTGCCAAGTATGGAGACCAAGGATGGATGATTTTCCTGACATCAGTCCTAGGTTTGACCAA CGGTTACCTGACTGTATGTGTCCTTACAGCTGCACCAAAAGGCTACAAGGGTCCGGAGCAGAATGCGTTGGGGAATTTGCTGGTGGTGTTCCTACTAGCA GGCATATTCTCAGGGGTTACTCTGGACTGGTTGTGGCTCATAGGGAAAGGATGGTGA
AA sequence Show only first row Show all	>Lus10039741 pacid=23165082 polypeptide=Lus10039741 locus=Lus10039741.g ID=Lus10039741.BGIv1.0 annot-version=v1.0 MEPNDGNAANPNMEGKYAAVIVCWILGNGCLFSWNSMLTIQDYYVPLFPDYHPSRVLTLVYQPCAVITIAILAYREAKINTRNRNLLGYSLFFISSLAVL VLDIATSGRGGIGTFIGICIISGLFGVADAHVQGGMVGDLSFMHPIFIQSFLAGLAASGALTSALRLITRAAFENTKNGLRKGALLFFAISSFFELVCLV LYAFAFPKLPVVKFYRAKAATEGSKTVASDLAAGGLQTLPDQEAVEQAKNVTRFSNRELLMQNADYVIDIYLIYALTLSIFPGFLSEDTGSHGLGTWYAL VLIAMYNVWDLIGRYIPLANFAKLESRKGLTGAVLSRFLLIPAFYFTAKYGDQGWMIFLTSVLGLTNGYLTVCVLTAAPKGYKGPEQNALGNLLVVFLLA GIFSGVTLDWLWLIGKGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10039741 [exp]	0	1
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10017114 [exp]	6.7	0.6397
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	11.6	0.6555
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10032091 [exp]	16.2	0.6552
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	19.5	0.6469
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	26.2	0.6092
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10013999 [exp]	26.6	0.6296
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10006798 [exp]	28.8	0.6187
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	39.3	0.6212
					Lus10014941 [exp]	39.3	0.6266
AT5G14210			Leucine-rich repeat protein ki...		Lus10041589 [exp]	46.2	0.5550

Compare expression of checked genes

Lus10039741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.