Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28100 390 / 5e-137 unknown protein AT3G18050 195 / 6e-60 unknown protein AT3G19300 41 / 0.001 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018524 [exp] 568 / 0 AT4G28100 397 / 1e-139 unknown protein Lus10027253 [exp] 207 / 1e-64 AT3G18050 306 / 2e-103 unknown protein Lus10038961 [exp] 200 / 5e-62 AT3G18050 308 / 6e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118300 [exp] 420 / 3e-148 AT4G28100 408 / 5e-144 unknown protein Potri.013G148700 [exp] 412 / 2e-145 AT4G28100 377 / 8e-132 unknown protein Potri.015G040900 [exp] 200 / 6e-62 AT3G18050 347 / 2e-119 unknown protein Potri.012G049000 [exp] 187 / 4e-57 AT3G18050 352 / 2e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039742 pacid=23165385 polypeptide=Lus10039742 locus=Lus10039742.g ID=Lus10039742.BGIv1.0 annot-version=v1.0 ATGGCGTCGAAATTGCTCTGTTTCATCTTACTCTGTTTCTCGTCTTTCATTTCTCAAGCTCAAGCTGGCTTCTTAGCCGAACCGGTTCCCAAATCCAACC CGAACACCGTACCGGCCTTCCCCCTCCAGACCGAGTCCCAAATCTGCCGCCTTGACCTCTCTGCCGAGCTCTTCGGCGGCGTCAACGACGCCTGCGGCCG TAACCTCGACCGGAGCCGCTGCTGTCCAGTACTCGCCGCCTGGCTCTTCGCCGCTCACGCTAAATACGCCCTCCAAGTCCCTGCTCCGACCAACTCCTCC TCTTCCTCTCCTGACGCCGCCTCCGACGACGACCAGCTTCCGATGATGCCGGACGACTCACAAAAATGCGTGAACTCTCTCCAGACAGCTTTAGTCAGCA AGAACATCAACATCCCCCAGCCCAACGCCAGCTGCGACCCTATACTATGCTTCTGTGGGATCCGGCTACACCAGATCACCTCCCTTAGCTGCCCCGCCGC TTTCAACGTCTCCTCCGGCTCCCACAACGCCACTCCGACCGCCACCGTGAAAAATCTCGAGAAGAATTGTAGAAATTCCTCGTACTCCGGATGTACTAAA TGCCTCGGCGCTCTCCAAAAGCTAAAGTCCACCGGAAACAAGACGACTTCCCCTGCTTCCGGCGAGGATAGGGCGGAGAAGATGTTCAACAGAGACTGCC AGCTGATGGGGCTGACGTGGCTTCTGGCTAGGAACAAGACGGAGTACATCCCCACCGTCTCGGCGGTTCTGAGGGCGGTGATGTACAGTGCTCATCCGCA TGAGTCGAAGTGCAGCCCCGACCAGGAGAACATGCCGTTGGCCGTTGATTCTCTGCAGTTCGAGCGGTCTACTTCTTGGGCGGCGGAGAAGGGCGGCTGG TTTTTGCGGTCGACGTCGGTGATTGTGATGGTTTTGTTTACTGTAGGGCTACGGTGGTGA
AA sequence Show only first row Show all	>Lus10039742 pacid=23165385 polypeptide=Lus10039742 locus=Lus10039742.g ID=Lus10039742.BGIv1.0 annot-version=v1.0 MASKLLCFILLCFSSFISQAQAGFLAEPVPKSNPNTVPAFPLQTESQICRLDLSAELFGGVNDACGRNLDRSRCCPVLAAWLFAAHAKYALQVPAPTNSS SSSPDAASDDDQLPMMPDDSQKCVNSLQTALVSKNINIPQPNASCDPILCFCGIRLHQITSLSCPAAFNVSSGSHNATPTATVKNLEKNCRNSSYSGCTK CLGALQKLKSTGNKTTSPASGEDRAEKMFNRDCQLMGLTWLLARNKTEYIPTVSAVLRAVMYSAHPHESKCSPDQENMPLAVDSLQFERSTSWAAEKGGW FLRSTSVIVMVLFTVGLRW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28100			unknown protein		Lus10039742 [exp]	0	1
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	2.2	0.7706
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	4.5	0.7641
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Lus10015996 [exp]	9.8	0.7246
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	10.2	0.7559
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Lus10035413 [exp]	11.8	0.6883
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028326 [exp]	12.6	0.6937
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	12.7	0.7595
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	13.6	0.7520
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002252 [exp]	14.1	0.7130
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	19.7	0.7132

Compare expression of checked genes

Lus10039742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.