Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 171 / 7e-50 O-methyltransferase family protein (.1) AT4G35150 140 / 2e-38 O-methyltransferase family protein (.1) AT1G51990 125 / 7e-33 O-methyltransferase family protein (.1.2) AT5G54160 116 / 2e-29 ATOMT1 O-methyltransferase 1 (.1) AT1G33030 108 / 1e-26 O-methyltransferase family protein (.1) AT1G77520 106 / 9e-26 O-methyltransferase family protein (.1) AT5G53810 105 / 3e-25 O-methyltransferase family protein (.1) AT1G77530 96 / 6e-22 O-methyltransferase family protein (.1) AT5G37170 84 / 5e-18 O-methyltransferase family protein (.1) AT1G63140 82 / 3e-17 O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018526 [exp] 615 / 0 AT4G35160 176 / 1e-51 O-methyltransferase family protein (.1) Lus10033653 [exp] 284 / 1e-93 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1) Lus10008538 [exp] 276 / 2e-90 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1) Lus10033656 [exp] 275 / 6e-90 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10033655 [exp] 272 / 7e-89 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1) Lus10017699 [exp] 265 / 3e-86 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10017691 [exp] 262 / 7e-85 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10018629 [exp] 253 / 1e-81 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10018628 [exp] 246 / 6e-79 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093000 [exp] 284 / 9e-94 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 281 / 2e-92 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 275 / 3e-90 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 271 / 9e-89 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 269 / 9e-88 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 268 / 1e-87 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 267 / 3e-87 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 265 / 3e-86 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 260 / 2e-84 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.011G059500 [exp] 254 / 3e-82 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10039744 pacid=23165322 polypeptide=Lus10039744 locus=Lus10039744.g ID=Lus10039744.BGIv1.0 annot-version=v1.0 ATGGAGCTTGAAGCGCAGGCTCACATCTTCTACCACTCTTTCAGCTACATGGTCTCGTTGTCGATGAAATGCGCGGTCGAGCTCGGGATACCGGACCTCA TCCACCGCCGATCTCCCTCGCCCACTTCGCTGTCCACTCTCGTCTCGGCCCTCGAGCTGGACCCGTCGAAATATGAGGCCGTTAAACGCCTCATGCGCCT CCTCGTCCACGCTGGCTTCTTCCAGATACAAATACAGGAAGAAGGAAGAGGTCAAGAGGAATTTAATTACCTTCCTACCCCTTCGACGAAGCTCCTCATC ACCCCTCATTTGTTGTTGAACCTCGACCCGAAGATACTCGCCACTTGGACGTCCTTCAGTGGCTGGTTCCGCGAAGGAGGCGGTAAAGGTGACGTGCCAC TTTTCCAGGCGGTGAATGGGTTGCCGGCGTGGGAGTACTTGGCTGAAAATCCGGAGCTGAGGAAGATGTTCTACCTCGCCACCGATCAGGACTCCAGATT GATAGCGGAAGGGCTGGTTACGAGGTGCAAGGAGGTGTTCGACGGAGTCGAGACGCTGGTGGATGTCGGCGGAGGTAACGGCATCATGGCCGTTGCCATT GCTAAGGCGTTGCCAAAGATCGAATGCACCGTACTCGATCTGCCTCACGTCGTCGTTAACTCGGAAGAGGGCGACGGCGTTGACAACGTCAAGTATGTCG GTGGGAGCATGTTTGAAAAAGTCCCGCCTGCCGATGCTGTTCTCCTTAAGTCAGTTCTGCACAATTGGAACGACGAAAAAAGCGTGGAGCTATTGAAGAT ATGCAGAGAGGCAGTCTGTGACCAAGAAGGGGAGACGAAGAAGAAGAAGAAAGGGAAGGTGATACTCGTAGACATGGTGGTTGAAAACGAGCAAGGCGGG ACGGTGGATGACAGAGAGTTGACTCAAGTGAAGCTCTGCTTCGACTTGTTGATGTTGAGTTATTGCAATGGCAAGGAGAGGACCGAGAAGGAATGGAAGA ACTTGTTCATGTTGGCTGGCTTTAGTGACTACAAGATCGTTCAATCTTTGGGCACGTTGACTGTCGTTGAAGTATATCCTTAA
AA sequence Show only first row Show all	>Lus10039744 pacid=23165322 polypeptide=Lus10039744 locus=Lus10039744.g ID=Lus10039744.BGIv1.0 annot-version=v1.0 MELEAQAHIFYHSFSYMVSLSMKCAVELGIPDLIHRRSPSPTSLSTLVSALELDPSKYEAVKRLMRLLVHAGFFQIQIQEEGRGQEEFNYLPTPSTKLLI TPHLLLNLDPKILATWTSFSGWFREGGGKGDVPLFQAVNGLPAWEYLAENPELRKMFYLATDQDSRLIAEGLVTRCKEVFDGVETLVDVGGGNGIMAVAI AKALPKIECTVLDLPHVVVNSEEGDGVDNVKYVGGSMFEKVPPADAVLLKSVLHNWNDEKSVELLKICREAVCDQEGETKKKKKGKVILVDMVVENEQGG TVDDRELTQVKLCFDLLMLSYCNGKERTEKEWKNLFMLAGFSDYKIVQSLGTLTVVEVYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10039744 [exp]	0	1

Compare expression of checked genes

Lus10039744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.