Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03940 257 / 3e-80 HXXXD-type acyl-transferase family protein (.1) AT1G03495 252 / 2e-78 HXXXD-type acyl-transferase family protein (.1) AT3G29670 218 / 1e-65 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29635 202 / 3e-59 HXXXD-type acyl-transferase family protein (.1) AT5G39080 202 / 3e-59 HXXXD-type acyl-transferase family protein (.1) AT5G39090 191 / 2e-55 HXXXD-type acyl-transferase family protein (.1) AT5G61160 189 / 1e-54 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39050 186 / 3e-53 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29680 183 / 3e-52 HXXXD-type acyl-transferase family protein (.1) AT3G29590 179 / 5e-51 AT5MAT HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039746 [exp] 467 / 3e-162 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10014077 [exp] 285 / 3e-94 AT1G03495 94 / 4e-22 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 274 / 1e-86 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 271 / 9e-86 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10033754 [exp] 270 / 3e-85 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 247 / 3e-75 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10012743 [exp] 194 / 1e-57 AT1G03940 165 / 7e-47 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 191 / 8e-55 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 187 / 1e-53 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118101 [exp] 319 / 2e-104 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.019G118000 [exp] 315 / 8e-103 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 238 / 6e-73 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 204 / 6e-60 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 204 / 8e-60 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 203 / 1e-59 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 200 / 2e-58 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 195 / 2e-56 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 193 / 7e-56 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 193 / 9e-56 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10039745 pacid=23165320 polypeptide=Lus10039745 locus=Lus10039745.g ID=Lus10039745.BGIv1.0 annot-version=v1.0 ATGACACAATACTCAACCGCCGTCAAAACCACCGCCGAACTCCAAATCTCCCCGCCGCCGAACACCCTCCCTCCCACAACCACCATCCCACTCACAGTCT TCGACGTCCCATGGCTAATCTGCCACCCAGTCCAACGAGTCTTCTTCTACCACATCCCAACAATCTACACCGCCGAATTCCACAACTCAATAATCCCCAA ACTAACCTCCTCCCTCTCCGCCGCCCTCGTCCACTTCTACCCTTTCGCCGCCAAACTCATCTCCCCTCCCATCCCGACCAAGCCGTACATCCTCTACTCC CGAAACGACGCCGTTTCCTTCACCGTCGCGGAATCCACCGCCACCCTCGACTTCCACCAAGCCGCGTCAAACTCCCCCACCGACGTCCGTTTGCTCCACC CTCTTCTCCCCAAACTCCCTCCCGTTAAAACAAACCCCGACAGCGTCACCACAGAATCAAAGCTCTTGTCTTTAAAGGTCACTCTGTTTCCAAACTCTGG TTTCTCCATCGGATGCGAGTTCCGCCACGTGGCGGCTGACGGCTTAGCCTTCAACCACTTCGTCAAATCATGGGCGGAAATTTCCAAATCCGGCGCCGTT TTGGATGAATTCTCGAAATTGTCGATTTCTTCGCCGCCGTGTCACGACAAGGAGTTGATAGAGGAAAACAGAGTGTTGGAGGATAAGTTTCTGGAGAATT TCTGGAGCTTCAAATCGCCATGGGAAGGGGATGCACTTGAATGTCTCCTCGCTGACAAAGTCCGGGCGACGTTCTCCATCTCCGGCGAGCAAATTTCGAG GATGAAAGCTTTGGTGAACGGTGATGGCGGGAAATTGAAGCTGTTGTCGCCGCCGGCGACAACTTTCACGGTGACTAGTGCTTTGATATGGAGCAGTTTG ATCAAATCTCAACTGACCGAAATCCTCCTCGCCGGCGGCGAGGTGGAGGAAGATGAAGATAAATTAGACTGCTATGCGTTCCCGGTGGACTGCAGGGGAA GGATGGACCCGAAGCTTCCGGCGGGGTATTTTGGTAATTGTTTGTCCGGGGGAAGGGTGTTGGTGAGGAGGAAGGATTTGATCGGAGATTATGGGATTGT TACGGCGGCGAGGGAAATTGGCCGGAGGATTAAGGAGATTGGAGCGGAAGGAGCGGTGAGGAGCGTGGAGAAGTATTATTCGTTTTCGGAGTGGGGAGAG ATTTTGAGGCAGGGGGTTAAGCTGGTTACGGTGGCCGGTTCGGCCAAGTTGGGGGTTTACGAGACCGATTTCGGGTGGGGCAGGCCGTGTAAGACGGAGC CGGTTCATGTGGATTTCTCTGGGTCGGTTTATTTTTCGGACGGGAGGGACGTGGAGAAGGGTGGGATTGAGTTCGGGTTGTCGTTGAAAAGAGCCGAGAT GGATTCGTTTGTGGCCGTGTTCGAGTCGCAGTTGGCTCGATTTCGAGGTTGA
AA sequence Show only first row Show all	>Lus10039745 pacid=23165320 polypeptide=Lus10039745 locus=Lus10039745.g ID=Lus10039745.BGIv1.0 annot-version=v1.0 MTQYSTAVKTTAELQISPPPNTLPPTTTIPLTVFDVPWLICHPVQRVFFYHIPTIYTAEFHNSIIPKLTSSLSAALVHFYPFAAKLISPPIPTKPYILYS RNDAVSFTVAESTATLDFHQAASNSPTDVRLLHPLLPKLPPVKTNPDSVTTESKLLSLKVTLFPNSGFSIGCEFRHVAADGLAFNHFVKSWAEISKSGAV LDEFSKLSISSPPCHDKELIEENRVLEDKFLENFWSFKSPWEGDALECLLADKVRATFSISGEQISRMKALVNGDGGKLKLLSPPATTFTVTSALIWSSL IKSQLTEILLAGGEVEEDEDKLDCYAFPVDCRGRMDPKLPAGYFGNCLSGGRVLVRRKDLIGDYGIVTAAREIGRRIKEIGAEGAVRSVEKYYSFSEWGE ILRQGVKLVTVAGSAKLGVYETDFGWGRPCKTEPVHVDFSGSVYFSDGRDVEKGGIEFGLSLKRAEMDSFVAVFESQLARFRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039745 [exp]	0	1
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	1.0	0.9829
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	3.0	0.9533
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	4.5	0.9526
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10001856 [exp]	7.9	0.9307
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10024354 [exp]	8.1	0.9407
					Lus10027919 [exp]	8.7	0.9686
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	8.8	0.9593
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	10.2	0.9542
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	10.2	0.9581
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	11.0	0.9507

Compare expression of checked genes

Lus10039745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.