Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03940 266 / 5e-84 HXXXD-type acyl-transferase family protein (.1) AT1G03495 260 / 1e-81 HXXXD-type acyl-transferase family protein (.1) AT3G29670 197 / 6e-58 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39090 191 / 1e-55 HXXXD-type acyl-transferase family protein (.1) AT5G39050 189 / 2e-54 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29635 186 / 1e-53 HXXXD-type acyl-transferase family protein (.1) AT5G39080 184 / 5e-53 HXXXD-type acyl-transferase family protein (.1) AT5G61160 182 / 4e-52 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 168 / 4e-47 HXXXD-type acyl-transferase family protein (.1) AT3G29590 166 / 4e-46 AT5MAT HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039745 [exp] 463 / 1e-160 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 287 / 4e-92 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 261 / 7e-82 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10033754 [exp] 254 / 2e-79 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 248 / 1e-75 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10012743 [exp] 204 / 1e-61 AT1G03940 165 / 7e-47 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 204 / 3e-60 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10041655 [exp] 192 / 1e-55 AT3G29590 277 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 186 / 3e-53 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118000 [exp] 358 / 1e-119 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.019G118101 [exp] 345 / 1e-114 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 241 / 2e-74 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 202 / 1e-59 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 202 / 2e-59 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 201 / 3e-59 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 199 / 1e-58 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 196 / 4e-57 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 194 / 3e-56 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 192 / 9e-56 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10039746 pacid=23165013 polypeptide=Lus10039746 locus=Lus10039746.g ID=Lus10039746.BGIv1.0 annot-version=v1.0 ATGACCCAATTTTCCTCCGCCGCCGTGAAAACCATCGATGAGCTGCAAATCACACCGCCGCCGGGGACAGTTCTCGCCACTTCCACCCCGCTCAATTTCT TCGACATCCTATGGTTCACCTGCCATCCAATCCAGCGAGTCTTCTTCTACCATCTCCCAGAAATCTCCAGTCTCCAATTCCACAATTCAATCATCCCCAA CCTCACTGCCTCGCTCTCCATCGCCCTCCGCTACTTTCACCCTTTCGCTGCGAAATTCATCTCCGTCCCCTTGCCAAACGAGCCCTACATCCTCTACTCC GACGGCGACTCTGTTCCCTTCACCGTCGCCGAATCCACCTCCCTCGACTTTAACAAAGTCACCTCCGACCAGCCAAACGACGTCAGATTGCTCCACCCTC TCCTCCCAAAGCTCCTCCCGCCGGTTACCAACTCTGACGATGGGTCGACGGTGTCCAATCTCCTCTCCGTGAAGGTCACTCTGTTTCCAAACTCCGGAGT CTGCATCGGGATCGAGTTCCGCCACGTGGCTGCTGACGGGTTGGCGTTCAACCATTTTGTGAAATCCTGGGCTTCAATTTCGAAATCCGTATGTAAGGAT TTGAGCTGGGTGGAAAAGAATCCACCTTTGGTCGACAGGGGATTGATTAAAGATCCGAATAACTACGGCAAAGTGTTTCTGGATCAGATTTGGAAGGTCT CAGCTCCGTGGGATGAAAATTGCGTACATGATAAGCTCCTCGATAAGGTCAGGGCGACGTTCGTGATCGACGGCGACGACATTTCACGGCTCAAGAAATT GGTGAGTGCGTCGGCGTTCGTGGTGGCGAGCGCGTTCGTTTGGACCAATTTGACCGAATCGCTGGCCGGCGAAGAAGATGGTGATGATGATAAGATCGAC AGCTATATATTTCCGGCGGATTGCAGGGGAAGGATTGAGCCGAAGGTTCCGGCGACCTATTTCGGGAACTGTCTCGGCGGGGTTCTGGTGTCGGTGAGGC GGAGGGATTTGGTCGGAGACGGCGGGTTTGCTGCGGCGGCGGGGGAGATTGTGGCGAAGATCGAGGAGATGGTGAGGGAAGGACCGTTGAGAGATGCGGC TAATTGGCTTACGAAGTACGAGTCGAATTTGAAATCAGGGCGGACCGTTACAGTTGCGGGGTCGTCCAAGTTGCGGGTTTATGAGACGGATTTCGGTTGG GGCAGGCCGAGGAAAACGGAGCCGGTTCATGTCGATTTCTCCGGGTCGGTTTACTTTTCAGATGTGAGGGATGTGGAGAAGGGTGGGATCGAGTTCGGGT TGGCGTTGAGTAGAGCTGAGATGGACTCGTTTGTGAGTGGGTTCGAGTCCCGGTTGAACAAGTTGCGGGAGGTTAATTGA
AA sequence Show only first row Show all	>Lus10039746 pacid=23165013 polypeptide=Lus10039746 locus=Lus10039746.g ID=Lus10039746.BGIv1.0 annot-version=v1.0 MTQFSSAAVKTIDELQITPPPGTVLATSTPLNFFDILWFTCHPIQRVFFYHLPEISSLQFHNSIIPNLTASLSIALRYFHPFAAKFISVPLPNEPYILYS DGDSVPFTVAESTSLDFNKVTSDQPNDVRLLHPLLPKLLPPVTNSDDGSTVSNLLSVKVTLFPNSGVCIGIEFRHVAADGLAFNHFVKSWASISKSVCKD LSWVEKNPPLVDRGLIKDPNNYGKVFLDQIWKVSAPWDENCVHDKLLDKVRATFVIDGDDISRLKKLVSASAFVVASAFVWTNLTESLAGEEDGDDDKID SYIFPADCRGRIEPKVPATYFGNCLGGVLVSVRRRDLVGDGGFAAAAGEIVAKIEEMVREGPLRDAANWLTKYESNLKSGRTVTVAGSSKLRVYETDFGW GRPRKTEPVHVDFSGSVYFSDVRDVEKGGIEFGLALSRAEMDSFVSGFESRLNKLREVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039746 [exp]	0	1
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	3.0	0.9894
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001103 [exp]	6.9	0.9764
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	8.4	0.9805
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	11.4	0.9803
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	15.4	0.9798
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	15.8	0.9796
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039469 [exp]	15.9	0.9772
AT1G62420			Protein of unknown function (D...		Lus10003258 [exp]	16.1	0.9706
AT1G49860		ATGSTF14	glutathione S-transferase (cla...		Lus10036808 [exp]	17.7	0.9690
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	20.3	0.9763

Compare expression of checked genes

Lus10039746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.