Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20900 751 / 0 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT4G28130 643 / 0 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT2G18730 245 / 2e-75 ATDGK3 diacylglycerol kinase 3 (.1) AT4G30340 243 / 1e-74 ATDGK7 diacylglycerol kinase 7 (.1) AT5G57690 243 / 1e-74 ATDGK4 diacylglycerol kinase 4 (.1) AT5G63770 145 / 9e-38 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 117 / 7e-28 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018527 [exp] 839 / 0 AT2G20900 681 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10031612 [exp] 806 / 0 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10033732 [exp] 803 / 0 AT2G20900 730 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10019987 [exp] 258 / 2e-80 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10015514 [exp] 258 / 3e-80 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 247 / 2e-75 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1) Lus10008907 [exp] 127 / 3e-34 AT2G18730 322 / 1e-109 diacylglycerol kinase 3 (.1) Lus10010896 [exp] 135 / 9e-34 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10012719 [exp] 134 / 2e-33 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G148500 [exp] 778 / 0 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.001G408500 [exp] 693 / 0 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.006G174700 [exp] 250 / 2e-77 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.018G096700 [exp] 249 / 5e-77 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.007G097900 [exp] 144 / 8e-37 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.005G070900 [exp] 141 / 7e-36 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.012G066300 [exp] 123 / 1e-29 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.006G172400 [exp] 43 / 1e-05 AT5G57690 83 / 2e-20 diacylglycerol kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10039747 pacid=23165178 polypeptide=Lus10039747 locus=Lus10039747.g ID=Lus10039747.BGIv1.0 annot-version=v1.0 ATGGGTTCAAATGCCGAGTCGAGTCTTCTGAAGGAATTCTACATTCCGACGTATGTACTTGTACCGGAATCGGAGGCGGTGAGCGTTACTGATTTTCCGC AGTGTCCTGTTTTGGTGTTCATCAACTCCAAAAGCGGTGGTCAGCTCGGTGGAGATCTTCTCCTAACCTATCGATCCATTCTCAATGACCACCAGGTTTT CGATTTAGGGGAGGAGACTCCTGATAGTGTGCTGAGAAGGGTATATGTGAACATTGAGAAGCTCAAGTCCGGCGGTGATGGGTTTGCTGCCAAGATTCAG GAGAGGTTGAAAATAATTGTTGCAGGTGGTGATGGAACTGCTGGTTGGCTTCTGGGTGTTGTTTGTGATCTTAAGTTCCCTCATTCTCCTCCAATTGCAA CTGTGCCTTTGGGAACTGGCAATAATCTTCCATTTGCCTTTGGCTGGGGAAAGAGGAATCCTGGAACAGATCGTCAGTCTGTTGTTTCCTTTCTTAAGGA GGTCATGAAAGCAAAGGAAATGAAGATTGACAACTGGCATATTATGATAAGGATGAAGACCCCGAAAGAAGGTTCTTGCGAACCGATTGCTCCTCTCGAG CTACCGCATTCTCTGCACACTGTTCATCGTGTCTCTTCATCAGATGAATTCAACAAGGAAGGTTATACAACATTTCGTGGCGGATTCTGGAACTACTTCA GCTTGGGCATGGATGCTCAAATATCCTATGCATTTCATTCTGAGAGGAAACTGCATCCTGAAAAATTCAAGAATCAGTTGGCTAATCAGAGTACTTATGC CAAGCTTGGTTGTACGCAAGGATGGTTTGCTGCTTCTGTATTCCAGTCCGACTCGAGAATAGCAAGCTTGGCGAAGGTGAAAGTCATGAAAAAAACAGGG CAGTGGGAAGATCTATCTATATCCAACAGCATAAGATCAATAGTGTGCCTCAACTTGCCCAGCTTTTCAGGCGGACTGAATCCTTGGGGTACACCAAGCA CTTGGAAACGCCGTGACCGAGACTTGACGCCACCTTATGTCGACGATGGGCGAATCGAGGTTGTTGGGTTTAGAGACGCATGGCATGGACTCGTCTTGCT TGCTCCAAAAGGAAAAGGACACGGAACTCGCCTCGCACAGGCACACAGAATAAGGTTCGAATTCCACAAAGGCGTTGCGGATCACACGTACATGAGGATT GACGGCGAGCCTTGGAAGCAACCATTGCCAACCGACGATGACACGGTAGTCGTGGAGATCTCTCACCTAGGCCAAGTGAATATACTAGCCACGAACGACT GCAGGTCAAAGAGCATGACAGATCCTTCAACTCCAAGTCACCCTGGCCGAGACGAAGACGACCAAGATAGCGAGGAAGATTGTGGAGAAGAATTCAGGAA GTTCGGCGCAGCAGACACATTCAAGATGCCAGATGAGTTCGACATTTCCCATCTTAGTTAA
AA sequence Show only first row Show all	>Lus10039747 pacid=23165178 polypeptide=Lus10039747 locus=Lus10039747.g ID=Lus10039747.BGIv1.0 annot-version=v1.0 MGSNAESSLLKEFYIPTYVLVPESEAVSVTDFPQCPVLVFINSKSGGQLGGDLLLTYRSILNDHQVFDLGEETPDSVLRRVYVNIEKLKSGGDGFAAKIQ ERLKIIVAGGDGTAGWLLGVVCDLKFPHSPPIATVPLGTGNNLPFAFGWGKRNPGTDRQSVVSFLKEVMKAKEMKIDNWHIMIRMKTPKEGSCEPIAPLE LPHSLHTVHRVSSSDEFNKEGYTTFRGGFWNYFSLGMDAQISYAFHSERKLHPEKFKNQLANQSTYAKLGCTQGWFAASVFQSDSRIASLAKVKVMKKTG QWEDLSISNSIRSIVCLNLPSFSGGLNPWGTPSTWKRRDRDLTPPYVDDGRIEVVGFRDAWHGLVLLAPKGKGHGTRLAQAHRIRFEFHKGVADHTYMRI DGEPWKQPLPTDDDTVVVEISHLGQVNILATNDCRSKSMTDPSTPSHPGRDEDDQDSEEDCGEEFRKFGAADTFKMPDEFDISHLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10039747 [exp]	0	1
					Lus10030789 [exp]	2.0	0.8872
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	9.7	0.8893
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	13.1	0.8853
					Lus10011286 [exp]	15.5	0.7474
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	15.9	0.7392
AT1G30050			unknown protein		Lus10035609 [exp]	17.2	0.8857
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	21.8	0.8771
AT3G47570			Leucine-rich repeat protein ki...		Lus10035724 [exp]	25.6	0.8759
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	27.6	0.8745
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	29.5	0.8735

Compare expression of checked genes

Lus10039747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.