Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20890 334 / 2e-115 PSB29, THF1 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018528 [exp] 479 / 2e-172 AT2G20890 363 / 1e-126 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G117900 [exp] 376 / 5e-132 AT2G20890 397 / 4e-140 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1) Potri.013G148400 [exp] 371 / 5e-130 AT2G20890 416 / 1e-147 THYLAKOID FORMATION1, photosystem II reaction center PSB29 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11264 [flax] [poplar] ThylakoidFormat Thylakoid formation protein
Representative CDS sequence Show only first row Show all	>Lus10039748 pacid=23165257 polypeptide=Lus10039748 locus=Lus10039748.g ID=Lus10039748.BGIv1.0 annot-version=v1.0 ATGGCGGCACTCACTTCCGTCTCCTTCTCGCCGGCGATTGGTCACTCCACCGCCGAATCCAGGTCCTCCTCATCCTCCTCCTTTAGCCGCTCGTTAGCTT TCTCCACCTGCGAAGCCTTCCGTTTCCGAGTTTCCGCCTCCGCTCGCCTCCGTAGTTCTAGCTCCTCCGCCATCGACGTCCGCTGCATGTCCACCTCTGC AGATTTACCAACAGTGGCAGAGACGAAGCTGAATTTCCTCAAAGCGTATAAGAAGCCAATCCCTAGCATCTACAACAACGTTCTCCAGGAGCTGATCGTG CAGCAGCATTTGATCAAGTACAAGAAGACGTACTCTTACGACTCCGTGTTTGCACTTGGGTTCGTGACCGTCTACGATAAGCTAATGGAAGGATACCCAG TCGATGGGGATCGGGAGATCATCTTCCAAGCTTATATTAGGGCATTGCAGGAGGAACCTGAGCAATACAGAAATGATGCTAACAAGCTCGAGGAATGGGC GAGGGCTCAGACTGCTGCTTCATTGGTTGAGTTTCCTTCGAGAGACGGTGAAGTTGAGGGTATGTTGAAAGCTATTGCGGAAAGAGCTGCGGCTGGCAAA TTCAGTTACAGCCGGTTCTTTGCTGTTGGGCTCTTCCGCCTTCTCGAGCTTTCGAATGCTACGGAGCCCACTGTGTTGGAGAAGCTATGCGCAGCTCTCA ACGTGGACAAAAGGAGTGTGGATCGAGATCTTGATGTGTACCGCAATCTACTCTCGAAGCTAGTCCAGGCAAAGGAGTTGCTGAAGGAGTATGTTGCAAG GGAGAAGAAGAAGCGCGAGGAAAGATCAGCAGAATCGCAGAAGGCCAGCGAAGCAGTCAAGAACTGCTTGGCGCAGCCTAACTACGTAGGCCAGTAG
AA sequence Show only first row Show all	>Lus10039748 pacid=23165257 polypeptide=Lus10039748 locus=Lus10039748.g ID=Lus10039748.BGIv1.0 annot-version=v1.0 MAALTSVSFSPAIGHSTAESRSSSSSSFSRSLAFSTCEAFRFRVSASARLRSSSSSAIDVRCMSTSADLPTVAETKLNFLKAYKKPIPSIYNNVLQELIV QQHLIKYKKTYSYDSVFALGFVTVYDKLMEGYPVDGDREIIFQAYIRALQEEPEQYRNDANKLEEWARAQTAASLVEFPSRDGEVEGMLKAIAERAAAGK FSYSRFFAVGLFRLLELSNATEPTVLEKLCAALNVDKRSVDRDLDVYRNLLSKLVQAKELLKEYVAREKKKREERSAESQKASEAVKNCLAQPNYVGQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	0	1
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	1.0	0.9634
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	1.7	0.9586
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	2.0	0.9614
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10018747 [exp]	2.6	0.9398
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	3.2	0.9526
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	4.0	0.9281
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	4.0	0.9557
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10033819 [exp]	4.2	0.9342
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	4.9	0.9437
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10028471 [exp]	5.1	0.9193

Compare expression of checked genes

Lus10039748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.