Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039750 pacid=23165087 polypeptide=Lus10039750 locus=Lus10039750.g ID=Lus10039750.BGIv1.0 annot-version=v1.0 ATGGTGAGCGATGCCACGGGTGGTAATAGTGTTCACAACATATACTTCATATGTCTAGGCATCCTCGACCTTTGCATACTCGCGCTACTCGCTTTCAGGA ATGCTCCTGTCCATCATAGCCAGTTTGGTCGGACTATTGAGGGGATTAAAGGAGATGCCACTTTGGTTGTTGCTCGAGTATCTATTCGAGATGTCGGAGT TACAATGTACCACAATGTACCACATACTGATATCTTTATCAGTGTCCTGTGTGCCATAAGTACTGAAAATGACATCTCTATCCTCATTCACCACTTCCAG TACTCGTTGAGTAGAGGACAACACCGACTTTTCCAGTTGGCGGAAATACTGTTGGCTTTCCTCTCAAAACCAGCAGCACCAGAGCTCTCTGTAAGACTGT AA
AA sequence Show only first row Show all	>Lus10039750 pacid=23165087 polypeptide=Lus10039750 locus=Lus10039750.g ID=Lus10039750.BGIv1.0 annot-version=v1.0 MVSDATGGNSVHNIYFICLGILDLCILALLAFRNAPVHHSQFGRTIEGIKGDATLVVARVSIRDVGVTMYHNVPHTDIFISVLCAISTENDISILIHHFQ YSLSRGQHRLFQLAEILLAFLSKPAAPELSVRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039750 [exp]	0	1
					Lus10005187 [exp]	2.4	0.9995
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	2.6	0.9721
					Lus10010117 [exp]	3.5	0.9995
AT3G59800			unknown protein		Lus10027089 [exp]	4.2	0.7474
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	4.2	0.9995
AT3G24620		ATROPGEF8, ROPG...	RHO guanyl-nucleotide exchange...		Lus10034927 [exp]	4.6	0.7347
					Lus10002152 [exp]	4.9	0.9995
AT1G11340			S-locus lectin protein kinase ...		Lus10005136 [exp]	4.9	0.8436
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	5.5	0.9995
					Lus10019746 [exp]	5.8	0.7500

Compare expression of checked genes

Lus10039750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.