Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 611 / 0 S-locus lectin protein kinase family protein (.1) AT4G00340 419 / 3e-134 RLK4 receptor-like protein kinase 4 (.1) AT4G21380 394 / 1e-124 ARK3 receptor kinase 3 (.1) AT1G65790 385 / 4e-121 ARK1 receptor kinase 1 (.1) AT1G65800 384 / 7e-121 ARK2 receptor kinase 2 (.1) AT4G11900 371 / 1e-115 S-locus lectin protein kinase family protein (.1) AT4G27290 347 / 1e-107 S-locus lectin protein kinase family protein (.1) AT4G21390 348 / 4e-107 B120 S-locus lectin protein kinase family protein (.1) AT1G61380 345 / 1e-106 SD1-29 S-domain-1 29 (.1) AT1G11340 346 / 8e-106 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039732 [exp] 1104 / 0 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 613 / 0 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 612 / 0 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 556 / 0 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 498 / 3e-165 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 431 / 4e-139 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 426 / 7e-137 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018516 [exp] 440 / 5e-136 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039731 [exp] 423 / 2e-129 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 683 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 672 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 671 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 477 / 3e-156 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.005G014700 [exp] 404 / 2e-128 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 399 / 1e-126 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 397 / 2e-125 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 393 / 1e-124 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 391 / 7e-124 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 389 / 3e-123 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10039762 pacid=23165072 polypeptide=Lus10039762 locus=Lus10039762.g ID=Lus10039762.BGIv1.0 annot-version=v1.0 ATGGAAGCACTACTTTCCATGCTTTATCTTCTGATTCTCCTCTGTTTACTCTGCCTCAACAAGCTTCGCCCTTGCCATGGAATCGATAGGATCGCTGCAA ACCAATCACTTTCCGGCGACCAGACGCTCGTCTCCCCTGGAGGGATCTTCGAATTGGGTTTCTTCAGTCCTAGGGGAGGAGAAGGGTACTACATTGGAAT ATGGTACAAACAAGTATCTCCACGGACGGTGATTTGGGTGGCCAACAGAGACAGCCCTCTTTGGGAGGGGTCATCTTTGGAGCTCAAGATATCCGATGAC GGTAACCTAGCAATTTTCTTTGGGGGATCGAAAACCCCAAGCTGGTCAACCGACATGATCCCTTTTCATCCTTCATCCTCAGTCAACGCTGTTCTCCTTG ACCAGGGAAACCTCGTCCTCATACCAACTCATGGTCCCCCAAGTCCGCTCTGGCAGAGCTTCGATGAACCGAGCGATACCTTGGTTCCCGGTAGCAAGAT TGGGTTCAACAAGATTACTTCCAGAGAAGTATTTCTCACTTCCTGGAGGGAATATGAAGGTCCTACTCCAGGTCATTTCTCTCTCAAGTTGGGTTCAAAT CGGTCGCTTGAATGGTACATCCCCTTCTTTGCGGGGAGTAAGTATTTTAGTGGAACACGGATTTCAGAATTGAATTCCATGAACTTTGCTTATGCCGATG ATCAGAACGGGAGATATCTCACTTTTACTCAGTACAATAGAAGCCAAATCGACAAAATTGTCGATGAGGAATCAGATCGGTACATTCAGCAGCAGTATTC AAAGCATAGATCCAAGTCCAGTAATGATTCCCTGTTCTCGAGGTACGTTGTAGATGTAAAAGGACAGTTTCAGCTTCTGGTGTGGCTGGAATCCGCTCAG GAATGGCTGTCGATATGGCAAAGAGAGCCATCACAATGTGTAGCCAACGTCTACTGTGGTGCTTATGCAGGTTGTACATCAAAATCCAAGCATTTTTGTA ACTGTTTGAATGGGTTTAAACCGGTTTCTTGGGGCGATTACAATTCAGTATATGATAGATTACGCTCATACCTTAGCTGCTCTAGGAGTTCCCCTCTTCA GTGCAGCGAGACTGACTGGTTTTCGCCATATTACAATGTGGGATTGCCTATAAATCGTGAGAGGACATCATCAGCTAGAAGTTCAGATGACTGTAAGGCG ACATGTCTGAGATCTTGTAACTGCAGTGCTTATACTTACATTGAAAACCAATGCTCCCATTGGTATGATGTATTGTTTAATCTGCAGCTGGATGTCCCAA ATGGGAAAACCATTTTCGTCAAACTTGCAGCGAATGAATCCTCATTTCTTGACAACAACATTCATCAAAGGAAACACAACAAGATCGGAATCGTGATTGG CTCTGTGGCGGGTTCAACTATGTTGCTAGTTCTTGTTGCATTGACAATCCTGAGATGGAGGTATAAGATGCCTGGGAAATTAATGGAAGGGTTTTTGGTG GTTTTTACACACAGACATTTGAAGATTGCCACCAAGAATTTCTCACACAAGTTAGGAGAAGGAGGCTTCGGTTCTGTCTACAAAGGTACACTCCCCGATT CAAGTATTATAGCCGTCAAGAAGCTTCAGAGCATCAATTCCAGGCACGCTGAAAATCGCAAGCAGTTCCTTGCAGAAGTCAGGACGCTCGGTGCAATCCA GCACATTAATTTGGTTGGTCTCAGAGGGTTTTCATCTGATAATAATACAATGATGTTGGTCTATGATTACATGCCAAACGGTTCGGTATCGTCCCATTTG TTCGATCCTTCAAAGATCCTCGATTGGAAAATGCGGTACAACATTGCATTGGGAACAGCGAGAGGTTTAGCTTATATACACGAAAATTGCAGAGAATGTA TAATCCATTGTGACATCAAGCCAGACAATGTGCTATTGGATTCCGAGTGTCGACCTAAAGTTGCAGACTTTGGCCTGGCAAAGCTCTTTGGGAGAGATTT TAGTCGGGTGCTAACCACCTTGAGGGGAACTATCGGGTACATGCCGCCGGAATGGATTTCGGGGGAGGCGATTACGGTGAAAGCTGACGTGTACAGCTAC GGGATGGTGCTGTTGGAGCTGGTATCCGGCATGAGAAACTCGCAACCACATGTATGTATCGGTCACTACTTTCCTGTTTGGGTAGCAAATGTGATAAACG AAGGTGGGGATTTGGCTGAGGTGCTGGATCCAAGGTTACAAGGGAATGCTGATGGTGAAGAGTTGGAAAGAGTCTGTAGAGTTGCGGTTTGGTGCATTCA GGACAATGAAAGTAATCGCCCGAGCATGAGTCAGGTAGTGTACATTCTTGAACAGGTTTTGGAAGTGGGCATTCCTCCTGTTCCGAGTATTCTTCAGAGA TATGTTGATCCTGACAGCTAG
AA sequence Show only first row Show all	>Lus10039762 pacid=23165072 polypeptide=Lus10039762 locus=Lus10039762.g ID=Lus10039762.BGIv1.0 annot-version=v1.0 MEALLSMLYLLILLCLLCLNKLRPCHGIDRIAANQSLSGDQTLVSPGGIFELGFFSPRGGEGYYIGIWYKQVSPRTVIWVANRDSPLWEGSSLELKISDD GNLAIFFGGSKTPSWSTDMIPFHPSSSVNAVLLDQGNLVLIPTHGPPSPLWQSFDEPSDTLVPGSKIGFNKITSREVFLTSWREYEGPTPGHFSLKLGSN RSLEWYIPFFAGSKYFSGTRISELNSMNFAYADDQNGRYLTFTQYNRSQIDKIVDEESDRYIQQQYSKHRSKSSNDSLFSRYVVDVKGQFQLLVWLESAQ EWLSIWQREPSQCVANVYCGAYAGCTSKSKHFCNCLNGFKPVSWGDYNSVYDRLRSYLSCSRSSPLQCSETDWFSPYYNVGLPINRERTSSARSSDDCKA TCLRSCNCSAYTYIENQCSHWYDVLFNLQLDVPNGKTIFVKLAANESSFLDNNIHQRKHNKIGIVIGSVAGSTMLLVLVALTILRWRYKMPGKLMEGFLV VFTHRHLKIATKNFSHKLGEGGFGSVYKGTLPDSSIIAVKKLQSINSRHAENRKQFLAEVRTLGAIQHINLVGLRGFSSDNNTMMLVYDYMPNGSVSSHL FDPSKILDWKMRYNIALGTARGLAYIHENCRECIIHCDIKPDNVLLDSECRPKVADFGLAKLFGRDFSRVLTTLRGTIGYMPPEWISGEAITVKADVYSY GMVLLELVSGMRNSQPHVCIGHYFPVWVANVINEGGDLAEVLDPRLQGNADGEELERVCRVAVWCIQDNESNRPSMSQVVYILEQVLEVGIPPVPSILQR YVDPDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10039762 [exp]	0	1
AT1G79910			Regulator of Vps4 activity in ...		Lus10037536 [exp]	12.1	0.8016
AT5G41240		GST10B, ATGSTT2	glutathione S-transferase THET...		Lus10000606 [exp]	13.0	0.8170
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	14.5	0.7715
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	17.3	0.7892
AT5G36930			Disease resistance protein (TI...		Lus10013729 [exp]	24.5	0.7750
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	29.3	0.7696
AT5G58920			unknown protein		Lus10040699 [exp]	44.8	0.7660
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	55.0	0.7654
AT1G24560			unknown protein		Lus10029143 [exp]	55.6	0.7576
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10036451 [exp]	66.3	0.7394

Compare expression of checked genes

Lus10039762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.