Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28230 183 / 8e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018539 [exp] 617 / 0 AT4G28230 232 / 1e-72 unknown protein Lus10033724 [exp] 236 / 4e-74 AT4G28230 210 / 6e-64 unknown protein Lus10031619 [exp] 225 / 1e-69 AT4G28230 206 / 2e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G116200 [exp] 290 / 2e-94 AT4G28230 257 / 1e-81 unknown protein Potri.013G147500 [exp] 288 / 7e-94 AT4G28230 249 / 2e-78 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039766 pacid=23165231 polypeptide=Lus10039766 locus=Lus10039766.g ID=Lus10039766.BGIv1.0 annot-version=v1.0 ATGAGTGTGTTACAGAATCAAGAAGAAGACGCGGAGATGCAGATATGGAACAACGCGGCCTTCGAGGATTCCATGGTGGCAAAGGGATCTTCTTGGTGGT CTCAGTCAATCGAATCGGATTGTTCAAGCAAAGAGAACTTGAACCCAGATTCGATTTCGTCAACTCCGTTCAAGGGTGGCAAGACCGTCAATCCAGTGAA GTCAAAACAGGGGATTTTGTCTAAAAAGAGCTTGATTCGTGATGAGAAGGTGATTGATAAGGAGATTGAAGAGGTTGAGAGCGACATTCGACGGCTATCG TCGAGGCTGGAATCGCTGAGGCTGGAGAAGGCGGAGAAGCATCTTGCAGAAAGAAGGGCCAGGATGGTGCCGGTTAAGTTCATGGAGCAGAAACAGAGTG TCAAGTTCGACGAGCCTAGATTTGGTCGGAGAGGTGTTAGTTTGGGGCCGGCGGAGATCGCGTCGAGAGCGAGGATGATGACGATGACCACCCCTGTTTC TTCGACTTCGAATCGGAGGAAGTCCTGCTTCTGGAAGCTAGACGAGATCGACGAGCTGAAAGTAACGAAGGAGAGAGCGAAAAGCCAGAGCGTGAGTCCG AGATCTCGCAAGACGGGGACGAAACACCAGCCGCCGCCGAAGCATGCTCAGACGACGGTGGGTTCAAAACGGTCGGTGAAGAAGGACGATGGAGTTCTGT CTCTGATTCAGCCCAAGACTCTGTTTCGAGACGGAGGGGAGAAGTCGGTCAAGAAGGCAGGGCGAATCGTGGCGAGTAGGTACAACCAAACAGCGACGAA GAGTCAACGACAGTCGACGGAGGCGAGGAAGAGGTCCCTGCCGGAGAGCGACAAGGAAGACGGGAACAAACGGCGTGCTTCCAGAGGTAACGGATTGAAT CAGAAAACAGAGAGCGTCGTTAAACTGAAGAAGAAGTGGGAGATTCCGAATAAAGTGTTGGTGTTCAAAGGTAAAGAAGAAGACGACGATGAGGAATCAG AGGAATTCGTCACCACCGCCGGTGGTTTGCGGAAGATCAGGACGATTCAGCCTTGTTCGACGGTGGCGACTCCTAGAAACTCAGGTGCGGCGAAAAGGGT TGCCGATTTAGTAGGAAAGAAATCGGTTTTCGCCATTGATGAGGGTGATGTGGCTGAAGCAGAGAGCTCTGTTTGCTTGGAATTGAGTTTTGAAGATTAA
AA sequence Show only first row Show all	>Lus10039766 pacid=23165231 polypeptide=Lus10039766 locus=Lus10039766.g ID=Lus10039766.BGIv1.0 annot-version=v1.0 MSVLQNQEEDAEMQIWNNAAFEDSMVAKGSSWWSQSIESDCSSKENLNPDSISSTPFKGGKTVNPVKSKQGILSKKSLIRDEKVIDKEIEEVESDIRRLS SRLESLRLEKAEKHLAERRARMVPVKFMEQKQSVKFDEPRFGRRGVSLGPAEIASRARMMTMTTPVSSTSNRRKSCFWKLDEIDELKVTKERAKSQSVSP RSRKTGTKHQPPPKHAQTTVGSKRSVKKDDGVLSLIQPKTLFRDGGEKSVKKAGRIVASRYNQTATKSQRQSTEARKRSLPESDKEDGNKRRASRGNGLN QKTESVVKLKKKWEIPNKVLVFKGKEEDDDEESEEFVTTAGGLRKIRTIQPCSTVATPRNSGAAKRVADLVGKKSVFAIDEGDVAEAESSVCLELSFED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28230			unknown protein		Lus10039766 [exp]	0	1
AT4G28230			unknown protein		Lus10018539 [exp]	1.0	0.9453
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	2.0	0.8939
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042584 [exp]	11.6	0.8787
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027330 [exp]	15.7	0.8572
AT3G12870			unknown protein		Lus10031776 [exp]	16.8	0.8865
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	18.3	0.8583
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	19.1	0.8825
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	21.2	0.8477
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	24.8	0.8695
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10001765 [exp]	26.2	0.8692

Compare expression of checked genes

Lus10039766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.