Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 566 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21380 563 / 0 ARK3 receptor kinase 3 (.1) AT4G27290 562 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 558 / 0 ARK2 receptor kinase 2 (.1) AT1G61610 553 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 549 / 0 ARK1 receptor kinase 1 (.1) AT1G11350 544 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11340 544 / 0 S-locus lectin protein kinase family protein (.1) AT1G11280 543 / 0 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G21390 543 / 0 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039733 [exp] 1125 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 1113 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10018516 [exp] 1096 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039731 [exp] 1086 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 825 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 785 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 773 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 768 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10007600 [exp] 584 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134900 [exp] 659 / 0 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 651 / 0 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 649 / 0 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150900 [exp] 635 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 623 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.011G125601 [exp] 599 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 598 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 598 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 593 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 592 / 0 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10039767 pacid=23165242 polypeptide=Lus10039767 locus=Lus10039767.g ID=Lus10039767.BGIv1.0 annot-version=v1.0 ATGAAGATCTCACAAACTTTGACTAATCCTCTGAGTAATGTCATGGGTGGTCATCTCTGGTTCACCATCTTCATTCTCTTGATCTCTTCCGATACCCATC TCTGCTTCGGGGCTGACAGGATTGCTCTGAACCAATCTCTGACGGCAAACCAGACCCTGATCTCAGCAGGAAGTAGATTCGAACTGGGTTTCTTCAAACC AGGTAATTCGTCCAACTATTACCTTGGAATCTGGTACTACAGAATTCCTGTCAGGACAGTTGTCTGGGTTGCAAACAGAGAATCTCCAATTTCGGACGAC CATCTGTCCGGTGTTGTGTTAAAAATCTCCGGAGGTGGGTTAATTCTGCTCAGCAAGTTCCTGAAGATTCCGATTTGGTCCACCGAGTCAGATCCTGTTC GAGCTTCTTCGTCTTCATCGGGTGGAGAGGCTGTTCTTCTTGACGATGGGAATCTAGTGTTAATTTGTGGTGATGCTGCAGGTTCTGAAATCTTGTGGCA GTGGTTTGACAACCCAACCGACACGAATCTCCCCGGTGCGAAATTCGGCCACAACAAGATCACAGGTAAGTACTCGAAGATGGTTTCGTGGAAGTCCAAG GACGACCCTGCTCCCGGGAGATTCTCAATGCAGCTAAACCCGAACGGGTCGAGTCAGTTTGTGCTCATAGATAAGGACAGTAATAATTCTTCCTCGTCCC TGTATTGGAACAGTGGCACTTGGAATGGACGTTTCTTCAACTCAGTTCCTGAGCTGAGGGCCAACTTCACCTACCATTTCGTCTTCGTCGAAAACGACAG CGAGTCCTCCTACACTTATTCCTTGTACAACAAGTCAAGCATCTTCCGCGTGTTGATGAGTGATGACGGGAACCTCCAGTATTTGTTCTGGACGGAGGCT GCTCGGAAGTGGGCCTTGACCTGGTCGCAGCCGAAAGGGCAGTGCGAGATCGAGTCCTACTGTGGTGCGTTCTCGTCATGTGCCGACGAATCCATTCCCA CCTGTCACTGCTTGGAAGGGTTCGTTCCCAAGTCGAACGACGAGTACAGTTCCAACGTATTTTACAGCGGGTGCATTAGAAAGTCCGAGCTTAAGTGTGG GAGTTCACGAAACAGGACGAAGAGGAGTAGTACCGATGATGTCTTCATTCAAGGGTATGCCGTGCGTGATACGGCATCAGGCTCCCCTAAGTCCAGATCA GCTGGGAACGTCGAAGAGTGCGAATCTATCTGCTTTGCCACCTGCTTATGTAATGCGTATGCTTACCAGGGCGGTAGATGCTTGGTGTGGAATGGAGAAG TGTATAACATGTATAGGCTTGGTAATGAATCCATTGGTGGTGGTGTGCCAATTTATGTAAGGGTTGCGGCTGAAATCAAAGGTTCTTCAGGTGGTTCTAC TAAGAGAAAGGTTATCGAGGCTGTGCTTGCCTCTCTGGCTGCGGCTGTTCTTATCGGGGGGATTTTACTGTTTGCGGTCTCGAGAACGAACCGCAGGGGC AACCTAGGAAATAATGTGGAAGAAAGCTACGGTGTTGGTAATGGAGATGAAGAAAGCAACTCTAAGCTGACGTTCTTCAGCATCAAGAGCGTATTAGCTG CAACAGACAACTTTTCTGAAGCTAACAAACTAGGAGAAGGCGGGTTCGGACCTGTTTATAAAGGAGTTCTGCTTCCTGGTGATCAAGAAGTGGCCGTAAA AAGGCTTTCGAAGAAATCGGGACAAGGGTTAGAGGAATTCATGAATGAGCTGAAGCTCATTGCGAAGCTCCAACACACTCATCTAGTTAGGCTCTTAGGC TGCTGTGTTGAAAAGGATGAGATGATACTGATCTACGAGTACCTGCCTAATCGAAGCTTGGACAAACTGCTCTTTGATTCGTACGAGAAGGCAAAGTTGG ATTGGCTAACGAGAACTAAGATTATAGAAGGGATAGCTCAAGGACTATTGTACATCCACAAGTACTCGAGATTGAAGGTCATTCACAGGGACATCAAGGC AAGCAATGTACTGCTGGATGCTGGAATGAACCCCAAAATTTCGGATTTTGGGATGGCGAGGATTTTCGGGATTGGTCAGGCAGAAGCCAACACCAACCGT ATAGTGGGAACATATGGGTACATGTCTCCAGAGTATGCGTTCTACGGACAGTTCTCGGAGAAATCAGACATATTCAGCTACGGGGTACTGCTGTTGGAGA TCGTGAGCGGGAGGAGGAACACAGATTTTTACGATTCCGAAACTCCATTCTCGCTTCTTTGCTGGGCATGGGAGCTATGGAAAGAAGGTAAACCAGAAGA TCTACTTGATCCAGCCGTGAAGGATACCTGCATTAATGCTCCAGAATCCATGAAGTTAGTCCACGTTGGTCTGCTGTGCGTACAAGAGGATCCATCTGAC AGGCCGACAATGGCTTCCGTAGCTCAGATGTTGTCAAGCAACGATTCTCAGTCGTTTCCATTGCCAGGCAAACCGGCCTACATCACAAGGAGAGCTGTTG TTGCAACCGGAGTTCCTGCCATTTTCTCAAACAACCAATTGACAATGAGCTTGCCAACTGGTAGATAG
AA sequence Show only first row Show all	>Lus10039767 pacid=23165242 polypeptide=Lus10039767 locus=Lus10039767.g ID=Lus10039767.BGIv1.0 annot-version=v1.0 MKISQTLTNPLSNVMGGHLWFTIFILLISSDTHLCFGADRIALNQSLTANQTLISAGSRFELGFFKPGNSSNYYLGIWYYRIPVRTVVWVANRESPISDD HLSGVVLKISGGGLILLSKFLKIPIWSTESDPVRASSSSSGGEAVLLDDGNLVLICGDAAGSEILWQWFDNPTDTNLPGAKFGHNKITGKYSKMVSWKSK DDPAPGRFSMQLNPNGSSQFVLIDKDSNNSSSSLYWNSGTWNGRFFNSVPELRANFTYHFVFVENDSESSYTYSLYNKSSIFRVLMSDDGNLQYLFWTEA ARKWALTWSQPKGQCEIESYCGAFSSCADESIPTCHCLEGFVPKSNDEYSSNVFYSGCIRKSELKCGSSRNRTKRSSTDDVFIQGYAVRDTASGSPKSRS AGNVEECESICFATCLCNAYAYQGGRCLVWNGEVYNMYRLGNESIGGGVPIYVRVAAEIKGSSGGSTKRKVIEAVLASLAAAVLIGGILLFAVSRTNRRG NLGNNVEESYGVGNGDEESNSKLTFFSIKSVLAATDNFSEANKLGEGGFGPVYKGVLLPGDQEVAVKRLSKKSGQGLEEFMNELKLIAKLQHTHLVRLLG CCVEKDEMILIYEYLPNRSLDKLLFDSYEKAKLDWLTRTKIIEGIAQGLLYIHKYSRLKVIHRDIKASNVLLDAGMNPKISDFGMARIFGIGQAEANTNR IVGTYGYMSPEYAFYGQFSEKSDIFSYGVLLLEIVSGRRNTDFYDSETPFSLLCWAWELWKEGKPEDLLDPAVKDTCINAPESMKLVHVGLLCVQEDPSD RPTMASVAQMLSSNDSQSFPLPGKPAYITRRAVVATGVPAIFSNNQLTMSLPTGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10039767 [exp]	0	1
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	2.6	0.9152
AT3G53810			Concanavalin A-like lectin pro...		Lus10029315 [exp]	2.6	0.8602
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10002015 [exp]	5.7	0.8834
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	6.9	0.8813
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	8.1	0.8485
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	10.2	0.8501
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	12.5	0.8718
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	15.2	0.8685
AT5G47860			Protein of unknown function (D...		Lus10009920 [exp]	15.7	0.7450
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	16.6	0.8653

Compare expression of checked genes

Lus10039767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.