Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28220 717 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G05020 651 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 648 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 605 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT1G07180 246 / 5e-75 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 238 / 1e-71 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT5G08740 66 / 4e-11 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G44190 58 / 1e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018541 [exp] 1038 / 0 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10011259 [exp] 629 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10006737 [exp] 625 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10020087 [exp] 620 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10039768 [exp] 564 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10018540 [exp] 561 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10018427 [exp] 513 / 7e-177 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002601 [exp] 434 / 1e-145 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002599 [exp] 414 / 1e-135 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147200 [exp] 827 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G034100 [exp] 645 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 635 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147400 [exp] 634 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147300 [exp] 629 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.011G044600 [exp] 266 / 5e-82 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.004G036300 [exp] 266 / 6e-82 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.009G047100 [exp] 242 / 1e-73 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.007G098700 [exp] 72 / 5e-13 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G217800 [exp] 62 / 4e-10 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10039769 pacid=23165043 polypeptide=Lus10039769 locus=Lus10039769.g ID=Lus10039769.BGIv1.0 annot-version=v1.0 ATGTCGTTCTTCAGCAGAGCTGCTCGTCGCTTCCCTCCTTCAACCTCCAACTTTCTTGCCCTATTCACCATCAGTAGTGGAGGTCTGGTGGCATACTCAG ACTCACAAGTGGAAACTGAAGTGCCAGCTTCCATTGTCAACAAAAATGACGGCAAGAAGAAGAGAGTTGTGGTTCTCGGGACAGGATGGGCCGGAACAAG CTTCGTTAAGGATCTGGACGCTTCGATGTACGATGTTCAGGTCGTGTCGCCGAGGAATTACTTTGCCTTCACTCCTTTGCTACCCAGTGTCACTTGTGGA ACAGTTGAGGCCAGGAGCATTGTTGAGCCTATTAGAAATATGATTAGAAAGAGAAATGGAGAGATTCAGTTCTTGGAGGCGGATTGTGTTAAGATAGATT CCGAGAAGAACAGGATCTTCTGTAAAGCTAGCTTTGACAACAAATCTGTGGGGAAAGAGGAGTTCTCTCTGGAGTATGACTACTTGGTGATTGCAGTTGG AGCTCAAGTGAACACTTTCAACACGCCCGGTGTCAACGAGAACTGCCATTTTCTGAAGGATTTAGAGGATGCTCAGAGGCTTCGAAGGACGGTAATCGAT TGCTTCGAAAAGGCTGTCCTTCCTGATCTAACAGAAGAAGAGCGAAGAACGAACCTTCATTTCGTGATAGTTGGTGGCGGTCCGACTGGTGTGGAGTTTG CTGCTGAGCTGCATGACTTTCTGATCGAAGACTTGGTCAACATCTATCCGACCGTGAAGGATCTAGTCAAGATCAGTCTGGTCCAATCCGGAGATCATAT TTTGAACACGTTTGATGAACGGATAAGTTCGTTCGCTGAACAGAAGTTCGGAAGGGACGGAATTGAAGTCCAGACGGGATGTCGAGTTGTGAGTGTTTCT GATAAAGAAATCACTATGAAGATGAAGCCTACTGGAGAAGTCTGTTCCATACCTCATGGATTGGTTCTTTGGTCTACTGGTATAAGCACTCGACCGGTGG TGCAGGACTTCATGGACCAAATCGGCCAGGGTAATAGGCGTATTCTCGCAACTAACGAGTGGCTGCGAGTGAAGGAAACCGAAAACATCTATGCACTTGG TGATTCGGGAACGTTGACCATGGATGAATTCAAGGCTGTGGTGGGTGATATCGTGGCGAGGTATCCTCAAGTGGAGACGTATTTGAACAACCAGCATCTG GGAGCAGTGACGGATCTGTTGAAAGATGCACTGACCGATGACAAGAAAGAAATCGATATCGAAGGTTTCAAGAAAGCCATCCGTCTCGTGGATTCACAGA CCACTAGTCTACCTGCAACTGCACAGGTTGCTGCACAACAAGGGAAATACCTCGCGAGATGCTTCAACAGGAAAGACCAATGCAAGGAGCATCCTGAAGG TCCTCGTCGGTTTGCACGTGCTGGAGGCCGTCATTTCTTTGCTCCCTTCCGGTACAAGCATTTAGGGCAGTTTGCACCTTTGGGAGGAGAGCAAGCCGCT GCGGAACTTCCTGGTGACTGGGTTTCCATGGGACATAGTACTCAGTGGCTCTGGTATTCGGTCTACGCCAGCAAGCAAGTCAGCTGGCGTACACGATACT TGGTCGTATCCGACTGGACTCGAAGATACATTTTCGGTAGAGATTCTAGCCGTATTTGA
AA sequence Show only first row Show all	>Lus10039769 pacid=23165043 polypeptide=Lus10039769 locus=Lus10039769.g ID=Lus10039769.BGIv1.0 annot-version=v1.0 MSFFSRAARRFPPSTSNFLALFTISSGGLVAYSDSQVETEVPASIVNKNDGKKKRVVVLGTGWAGTSFVKDLDASMYDVQVVSPRNYFAFTPLLPSVTCG TVEARSIVEPIRNMIRKRNGEIQFLEADCVKIDSEKNRIFCKASFDNKSVGKEEFSLEYDYLVIAVGAQVNTFNTPGVNENCHFLKDLEDAQRLRRTVID CFEKAVLPDLTEEERRTNLHFVIVGGGPTGVEFAAELHDFLIEDLVNIYPTVKDLVKISLVQSGDHILNTFDERISSFAEQKFGRDGIEVQTGCRVVSVS DKEITMKMKPTGEVCSIPHGLVLWSTGISTRPVVQDFMDQIGQGNRRILATNEWLRVKETENIYALGDSGTLTMDEFKAVVGDIVARYPQVETYLNNQHL GAVTDLLKDALTDDKKEIDIEGFKKAIRLVDSQTTSLPATAQVAAQQGKYLARCFNRKDQCKEHPEGPRRFARAGGRHFFAPFRYKHLGQFAPLGGEQAA AELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRRYIFGRDSSRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	0	1
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10036677 [exp]	2.8	0.9026
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	3.7	0.9243
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	7.7	0.8910
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	8.0	0.9071
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	8.4	0.8918
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	9.3	0.9055
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	10.6	0.8908
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	12.8	0.9022
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	15.5	0.9018
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Lus10035376 [exp]	15.9	0.8930

Compare expression of checked genes

Lus10039769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.