Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28390 358 / 2e-119 Protein kinase superfamily protein (.1.2) AT3G51990 299 / 9e-98 Protein kinase superfamily protein (.1) AT3G59420 214 / 6e-61 ACR4 crinkly4 (.1) AT5G23170 201 / 3e-60 Protein kinase superfamily protein (.1) AT1G61860 194 / 5e-57 Protein kinase superfamily protein (.1) AT5G13160 188 / 5e-54 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G47850 192 / 2e-53 CCR4 CRINKLY4 related 4 (.1) AT3G24550 189 / 4e-53 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G38560 190 / 5e-53 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT5G02800 182 / 1e-52 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016371 [exp] 302 / 3e-97 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10000764 [exp] 206 / 1e-57 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 205 / 2e-57 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10029170 [exp] 202 / 5e-57 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10011148 [exp] 190 / 3e-55 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10012995 [exp] 184 / 2e-54 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10041426 [exp] 186 / 5e-54 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 186 / 1e-53 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029187 [exp] 185 / 1e-53 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G158600 [exp] 478 / 1e-165 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.009G055200 [exp] 312 / 3e-101 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.001G260800 [exp] 307 / 3e-100 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.003G010300 [exp] 248 / 5e-78 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.004G221800 [exp] 243 / 7e-76 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.017G029900 [exp] 208 / 2e-58 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 206 / 9e-58 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.019G078300 [exp] 201 / 1e-56 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.017G067900 [exp] 191 / 2e-55 AT5G13160 434 / 3e-150 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 186 / 9e-54 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039770 pacid=23165246 polypeptide=Lus10039770 locus=Lus10039770.g ID=Lus10039770.BGIv1.0 annot-version=v1.0 ATGGGTTACCTCCCTTGCAATGCCGACTCCGCCGTCGCAATCTGCGGCGACGGTCGTTCGCACCACAAAAAACCCACATCAACCACCACCAAGCACTTCA CTTACTCCGAATTAGCCGCCGCCACCGGGGACTTCTCCGTCGACAACTTTCTCGGAAAGGGCAGCCATGGAGCCGTCTACAAAGCCACCCTCGACGGCGG CAAACTCATCGCCGCCGTCAAAAAGACGACCCACCACCAACCTCCGACCAATTTCAGACCGGCGGCGGCGGTGACACCGCCGTCTCCGGCGGAGAACGAG ATTGAGATCCTGTCGAAAGTCCGTCACCCGAGGTTGGTCAACCTCATCGGCTTCTGCGCCGACCGGAGATTCATAGTCGTTGAGTACATGCCCAATGGTT CGCTTTACGACGTGCTGCACTCCGGTTCGGTTAGTCTTCCTGGTTGGACCAGGCGGGTACGGTTCGCTCACCAGGTAGCTAAAGCGGTTCAGGCGCTCCA TGGATCCGACCCGCCGGTGATCCACCGCGATATCAAATCGTCGAACGTCCTCATCGATGGAATGTTCAATGCTCGGCTGGGGGATTTTGGTTTGGCGTTG AGAGGACACGTGGAGGATGTCCGGGTCAAGTGTACACCGCCGGCGGGTACACTCGGGTATCTTGACCCGGGTTATCTTGCACCGGGAGATCTGAGCTCCA AGAGTGACGTGTTCAGCTTCGGGATCTTGCTTCTAGAGATAATCAGCGGTCGGAAAGCGATCGATGTGAATTTCAGTCCGCCCTCGGTTGTCGATTGGGC GGTTCCGTTGATCAAGCAGTTGGAATTCGATTCGGTTTGCGATGGCCGGATTGGTAAACCGGCGGACGGGAGTGTGGTTCGGAGCCTGACGGTTTTGGCG GCGAGGTGCGTGCAGTCGCCGGCGGAGAAGCGGCCGGGGATGGCCGAGGTTGTTGAAGGCCTGATGGTGGTGAGGAAGAGAATGGAGGCGCCGGATATCT TGATGCGGCTGAGGAGGCGGTTTGGGCCGCGGGAGGAAGAATCGCCTGATCCGACAGAAGACGGTGAGGAATCCGCCATCGTCGCCGGGATGAGGCGAAG GGTGATGAGTCGCAGAAACAGGAAAGTGTCGAATGCTTCAATTGCGAATCATGGCAGCATTTGGAACGGGGAATTTGGAATTGGGGCGGCGGAGTATTAC AGATTGAATAATAATTCCGGCGATGGTGGAGAGCGTACTAACTCTAACAGTAATGGAGGAGTAGGAATTCAAATAGAAGTAATAAAGCTGAGCAAGTCAA TGTCCACCGGAGTTCTAAACAGACGGCGAAGTTCTTTCCGGAGCAATAGCCACGGCTGCGGAAGAAGAGGGCATGACACAGGGGGCGAAATCGACGGTGA GATGTTGAAATTACGGATTGGTTTCGATGGGAAATCAGAGAAAGAGCTCCAAGAGAAGCCTCTGTTTTCAATTACGGGTTCCAGCTAG
AA sequence Show only first row Show all	>Lus10039770 pacid=23165246 polypeptide=Lus10039770 locus=Lus10039770.g ID=Lus10039770.BGIv1.0 annot-version=v1.0 MGYLPCNADSAVAICGDGRSHHKKPTSTTTKHFTYSELAAATGDFSVDNFLGKGSHGAVYKATLDGGKLIAAVKKTTHHQPPTNFRPAAAVTPPSPAENE IEILSKVRHPRLVNLIGFCADRRFIVVEYMPNGSLYDVLHSGSVSLPGWTRRVRFAHQVAKAVQALHGSDPPVIHRDIKSSNVLIDGMFNARLGDFGLAL RGHVEDVRVKCTPPAGTLGYLDPGYLAPGDLSSKSDVFSFGILLLEIISGRKAIDVNFSPPSVVDWAVPLIKQLEFDSVCDGRIGKPADGSVVRSLTVLA ARCVQSPAEKRPGMAEVVEGLMVVRKRMEAPDILMRLRRRFGPREEESPDPTEDGEESAIVAGMRRRVMSRRNRKVSNASIANHGSIWNGEFGIGAAEYY RLNNNSGDGGERTNSNSNGGVGIQIEVIKLSKSMSTGVLNRRRSSFRSNSHGCGRRGHDTGGEIDGEMLKLRIGFDGKSEKELQEKPLFSITGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	0	1
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	2.2	0.8686
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	3.2	0.8167
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031871 [exp]	3.9	0.8087
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	6.9	0.7701
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031130 [exp]	7.5	0.7702
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	12.0	0.7672
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	15.6	0.7173
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	17.0	0.7130
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	18.5	0.7561
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	19.0	0.7718

Compare expression of checked genes

Lus10039770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.