Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06810 349 / 1e-108 Mitochondrial transcription termination factor family protein (.1) AT4G19650 296 / 2e-93 Mitochondrial transcription termination factor family protein (.1) AT5G45113 191 / 4e-55 mitochondrial transcription termination factor-related / mTERF-related (.1) AT3G60400 104 / 2e-23 Mitochondrial transcription termination factor family protein (.1) AT1G61960 47 / 2e-05 Mitochondrial transcription termination factor family protein (.1) AT1G62150 47 / 3e-05 Mitochondrial transcription termination factor family protein (.1) AT1G61970 46 / 6e-05 Mitochondrial transcription termination factor family protein (.1.2) AT1G61980 43 / 0.0005 Mitochondrial transcription termination factor family protein (.1) AT1G62110 42 / 0.0009 Mitochondrial transcription termination factor family protein (.1) AT1G79220 42 / 0.0009 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018548 [exp] 614 / 0 AT5G06810 271 / 5e-81 Mitochondrial transcription termination factor family protein (.1) Lus10012021 [exp] 390 / 5e-130 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10038336 [exp] 278 / 9e-87 AT4G19650 475 / 2e-162 Mitochondrial transcription termination factor family protein (.1) Lus10013142 [exp] 157 / 1e-41 AT3G60400 559 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048300 [exp] 481 / 9e-166 AT5G06810 485 / 2e-159 Mitochondrial transcription termination factor family protein (.1) Potri.016G048200 [exp] 476 / 3e-163 AT5G06810 501 / 3e-165 Mitochondrial transcription termination factor family protein (.1) Potri.016G048400 [exp] 473 / 3e-162 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.012G118200 [exp] 311 / 4e-99 AT4G19650 549 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G044900 [exp] 96 / 8e-21 AT3G60400 598 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.015G115701 [exp] 81 / 6e-18 AT4G19650 139 / 2e-39 Mitochondrial transcription termination factor family protein (.1) Potri.018G051600 [exp] 47 / 2e-05 AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1) Potri.001G029400 [exp] 44 / 0.0001 AT5G07900 181 / 4e-53 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10039774 pacid=23165208 polypeptide=Lus10039774 locus=Lus10039774.g ID=Lus10039774.BGIv1.0 annot-version=v1.0 ATGGCTTCCAGTTGTGGAAATGATTTGGTCACTTACAGCCAAATTTCTCAAGCAGCTAGAAGAAAAGCTCGTAAGAAAGCTCAAGCTGCATTGTTAGACT ACTTGCATTCAACTAGGAGCTTACAATTTCTCGACGCAGACAACATAAGCAAAAACTCACCTCAGTTCCTGGAGAAAATACTTGCTCGGGTCGATTACTC CGAGCAAGATATCGGCAGATCCATCAGACGGTTTCTTCGGTATCACCCTGTGAATGAATTCGAGCCGTTCTTCGAGAGTTTGGGTTTGAATCCAGATGAC TACCCCTGCATTCTTCCTGAACACATGATGTTTCTCAGCGATGATAGCTTGCTCCTTGAGAATTATCGTGTCTTGTGTGAATATGGGATACCAAGAGATA AGATTGGGAAGCTTTTCATCCGAGTTCCTGAGATTTTTCGGCTTGATCATGGAGTCTTGGCGTCTAAACTTAAAGCATGGGAATGTGCAGGAATCAGCAG GTCTTTTATGGATAAGGTAATAGCTTCTAGCCCTCGTGTTTTGATTGGAAATGCTCATGTTGACTTTATTAGTGTGTTGACCATTCTCGGAAAGGGCGGT CTTTCGTTATCTTGTGTCGAAGAACATCTACCAGAGAATATAGATTGCACTTGGAGCCAGATTCTATCACTTGTCAATTTGTTGCTGAAGCATGGTTTAT GTGAAGAGCAATTATGCTCTCGGATAGATATTTTATTCGAGGAGCAGAAAATACTGTCGGTTATCGTGTTCTTGACGAAATTTGGCACCCCATTGCATCA AGCTTGTGCAGTCATTTTCGAGAATCGAGGAATTGAGATTGGGAAGTTTCTGTCTAGTATGAGACAGTGCTTTGTGTTCTTCAATGAGATTGACATGGAA CCGTTCGAGATTGGGAAGATTATACGTTCTCGCCCGTTACTATTAGGTTCATGTACGTTGAAGAAAACCAGCACCTTGTTATCTCGTCTGAAATCTGGAA AGCTGAGGCTTTGTGAAGCGATTCAGAAGGACCCTTTTCAGTTGAGGAATTGGGTGATTGGGGTAAAGTCTGAACCTTTAGGTCCGAGTGATAGGAAAAG ATCGAGTTCGTTGAAGAAACAGTTCTTGTTGGACATGGGTTTCAAAGATGAGGAATTGGGGAAAGCGATTGAGCATATCCGAGGCAAAGGTTCGGAGGTT CAGGAGAGGTTCGATTGTATAGTGAGAGCTGGTTTGAGTGAAGAGGATGTTTGTGAAATGATCAAGGCGTGTCCTTTGATTCTTAACCAGTCGAAGGAGG TTGTCGAGATGAAGATTCGTTTTGTTGTGAATGATTTGGGGTATCCTGTGTCGTCGTTGGTTGCTTATCCAAAGTTTTTGGTCCGTGCAGAGGAGTTTGT GAAGGTTAGGTTGTGTATGTATGATTGGCTTAGAGATCAAGGAGTCGTTGTTCGAGTTTTGGCTTTAAGTACTGTTCTTAGTTCGTCGGAGAGATTGTTT GTAAACCGGTATGTGAACATTCATCCCAGAGGGCCGGAAGTGTGGCAGGAACTGAAGAGGAAAATCTATGCCGGCTGA
AA sequence Show only first row Show all	>Lus10039774 pacid=23165208 polypeptide=Lus10039774 locus=Lus10039774.g ID=Lus10039774.BGIv1.0 annot-version=v1.0 MASSCGNDLVTYSQISQAARRKARKKAQAALLDYLHSTRSLQFLDADNISKNSPQFLEKILARVDYSEQDIGRSIRRFLRYHPVNEFEPFFESLGLNPDD YPCILPEHMMFLSDDSLLLENYRVLCEYGIPRDKIGKLFIRVPEIFRLDHGVLASKLKAWECAGISRSFMDKVIASSPRVLIGNAHVDFISVLTILGKGG LSLSCVEEHLPENIDCTWSQILSLVNLLLKHGLCEEQLCSRIDILFEEQKILSVIVFLTKFGTPLHQACAVIFENRGIEIGKFLSSMRQCFVFFNEIDME PFEIGKIIRSRPLLLGSCTLKKTSTLLSRLKSGKLRLCEAIQKDPFQLRNWVIGVKSEPLGPSDRKRSSSLKKQFLLDMGFKDEELGKAIEHIRGKGSEV QERFDCIVRAGLSEEDVCEMIKACPLILNQSKEVVEMKIRFVVNDLGYPVSSLVAYPKFLVRAEEFVKVRLCMYDWLRDQGVVVRVLALSTVLSSSERLF VNRYVNIHPRGPEVWQELKRKIYAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06810			Mitochondrial transcription te...		Lus10039774 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10013540 [exp]	10.1	0.7694
AT4G36440			unknown protein		Lus10041785 [exp]	15.8	0.6455
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10015604 [exp]	18.5	0.7079
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10008830 [exp]	20.6	0.7388
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	20.9	0.7447
AT1G64880			Ribosomal protein S5 family pr...		Lus10034602 [exp]	27.1	0.7167
AT2G38025			Cysteine proteinases superfami...		Lus10035535 [exp]	35.9	0.6743
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10009201 [exp]	37.0	0.6534
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	59.3	0.6438
					Lus10025603 [exp]	67.8	0.6699

Compare expression of checked genes

Lus10039774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.