Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36290 405 / 3e-141 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 394 / 5e-137 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 383 / 5e-133 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 370 / 8e-128 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 370 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 364 / 1e-125 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 316 / 7e-107 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G44510 285 / 1e-94 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 281 / 2e-93 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 276 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018549 [exp] 664 / 0 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 499 / 6e-179 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 498 / 3e-178 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 493 / 2e-176 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 492 / 3e-174 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 400 / 1e-139 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 396 / 1e-137 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 387 / 1e-134 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 386 / 4e-134 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021400 [exp] 432 / 2e-152 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 429 / 3e-151 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 426 / 3e-149 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 424 / 3e-149 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 406 / 4e-142 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 342 / 4e-117 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 323 / 2e-109 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 307 / 2e-103 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 153 / 6e-42 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 146 / 2e-39 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10039775 pacid=23165347 polypeptide=Lus10039775 locus=Lus10039775.g ID=Lus10039775.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCCAAAATTATTGCGGCACCGTTGATCGGAATCCTTACATGGGCAGTGTACAAGTCCCTCCGAGCGCCGCCGCCGAAGATTCCGGGGGCTC CGGGAGGACCTCCGGTGACCGCATCCCGAATGAAGCTCCGCGACGGCAGGCACCTCGCTTACCAGGAAAACGGGATACCAAAAGAAACCGCCAAATTCAA GATCGTCTTCGTCCACGGATTCATCTCGAACCGCCTCGATCCAATGATCGTCACCAATCTCTCTCCGGAAGCTGTGAAGGAGCTTGGAGTGTATGTGGTG ACATTTGACCGCCCGGGTTACGGGGAGAGCGACCCGGATCCGACCCGGACGCCGAAGAGCTTGGCTCTGGACATTGAAGAGCTAGCGGATTATCTCGGAC TGGGATCGAAATTCTACGTGGTGGGTAAATCCATGGGCGGTCAGGTCGTTTGGGGTTGCCTGAAGTACATCCCTCACAGGCTGGCCGGAGCGGCGTTAGT GGCGCCGGTGATCAATTACTGGTGGCAGAGCTTCCCCAAGGAGCTAGTAAAAGAAGCTTACAATCAGAAGCTTCCTCAGGATCAATGGGCGCTGAGAATT GCCCATTACTTACCCTGGCTGACGTACTGGTGGAACACCCAGAAGATTTTTCCTTCGTCGGCGGTGATCGCGCGGCGGCCGGAGACTCTGTCGGCGCAGG ATAAGGAGCTGATAGCCAAGCAGGGCGGGGAAGGGCGGTATCTTAAGGAAGTGGCGACTCAGCAAGGGGAGCATGAGTCGCTGCACAGAGACATGCGGGT CGGGTTCGGGAAGTGGGAGTTCGACCCGATGCTGATGGAGAATCCGTTTCCCGGTGGTGGAGGGTGTAGGGTGCATCTGTGGCAAGGGGATGAGGATAAG AAAGTTCCGGTGAAGTTGCAGAGGTTCATTGCGAAGAAGCTGACGTGGATTAAGTACCATGAGTTGCCCGGTGCCGGACATGCGCTGCATTTTGTTCCCG GGATGATTGAAGGCGTTCTCCGGGCTTTGCTGGTCGGAGAAGATAAGTAG
AA sequence Show only first row Show all	>Lus10039775 pacid=23165347 polypeptide=Lus10039775 locus=Lus10039775.g ID=Lus10039775.BGIv1.0 annot-version=v1.0 MEEAKIIAAPLIGILTWAVYKSLRAPPPKIPGAPGGPPVTASRMKLRDGRHLAYQENGIPKETAKFKIVFVHGFISNRLDPMIVTNLSPEAVKELGVYVV TFDRPGYGESDPDPTRTPKSLALDIEELADYLGLGSKFYVVGKSMGGQVVWGCLKYIPHRLAGAALVAPVINYWWQSFPKELVKEAYNQKLPQDQWALRI AHYLPWLTYWWNTQKIFPSSAVIARRPETLSAQDKELIAKQGGEGRYLKEVATQQGEHESLHRDMRVGFGKWEFDPMLMENPFPGGGGCRVHLWQGDEDK KVPVKLQRFIAKKLTWIKYHELPGAGHALHFVPGMIEGVLRALLVGEDK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	0	1
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	1.0	0.8787
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	3.2	0.8428
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	4.6	0.7740
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10038689 [exp]	7.1	0.7904
AT1G02570			unknown protein		Lus10025023 [exp]	8.1	0.8287
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	9.4	0.7638
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	10.0	0.8072
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10011326 [exp]	10.8	0.7304
AT3G10120			unknown protein		Lus10021358 [exp]	18.0	0.7627
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	21.8	0.7350

Compare expression of checked genes

Lus10039775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.