Plant FIBer expression Database

Lus10039776 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039778
[exp]
223 / 8e-74 ND /
Lus10018550
[exp]
222 / 2e-73 ND /
Lus10039781
[exp]
103 / 3e-27 ND /
Lus10018552
[exp]
74 / 6e-16 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G108500
[exp]
63 / 3e-12 ND /
Potri.019G108700
[exp]
57 / 4e-10 ND /
PFAM info
Representative CDS sequence
>Lus10039776 pacid=23165265 polypeptide=Lus10039776 locus=Lus10039776.g ID=Lus10039776.BGIv1.0 annot-version=v1.0
ATGAGACCACCCGCCAAATCCACCGCCGAGCCAGGCCACCGCAATTCCTTTGCGGAGTACGCCGTCTTGAAATCCACCGGTGGCGGCTTACCATCCTCCT
CCTCTTCCACTAACCTCCACCGCCTTCTGGAAGCCACCAACTTACTGGACATGCACGACGAGCCAACCCCAACTTCTCCCACCTCCCTCGCTCCACCGCA
ATCAATAATCCCCATCGACCTTCCCCCCGGCCAAAGCCGACCACCGATGATGACGGCGCCAGCTGGAGGACTGTCCCCCATCGGCTCCCTTCAGTCCGCC
GCACCCGAAATTAGCAGCCACCCGGACCTTGTGGCGGCAGCGCGTAGGGAGTACGACCTATGCGGTGCAGCGGAGGAAATGAGGGAATCTTGGAAAGCGA
AGTGGGTACCGTTTTTGCTGAACAGGATGAGGGAACTATCGGAGATGGAGGCGAAGAGTACGGTGGGGGTGGAGATCGCCGACATGATGGAGCTCTTGAA
GACGATGTACACGTCGGAAACGGTGTGTAAGGAGATCGGAGAGATCAGCGACAAGAGCCGGCAAGGGGTGATTAAGCTTCAAGAAGGGTTGTTGCTGGTT
GACAAGGCCAAGGAGCAGCTCCGATCTGCTCTCCATAACAAGCTCTTCTCTCTTGAATGA
AA sequence
>Lus10039776 pacid=23165265 polypeptide=Lus10039776 locus=Lus10039776.g ID=Lus10039776.BGIv1.0 annot-version=v1.0
MRPPAKSTAEPGHRNSFAEYAVLKSTGGGLPSSSSSTNLHRLLEATNLLDMHDEPTPTSPTSLAPPQSIIPIDLPPGQSRPPMMTAPAGGLSPIGSLQSA
APEISSHPDLVAAARREYDLCGAAEEMRESWKAKWVPFLLNRMRELSEMEAKSTVGVEIADMMELLKTMYTSETVCKEIGEISDKSRQGVIKLQEGLLLV
DKAKEQLRSALHNKLFSLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10039776
[exp]
0 1
AT3G60820 PBF1 N-terminal nucleophile aminohy... Lus10030272
[exp]
2.4 0.8282
AT3G58190 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, l... Lus10033873
[exp]
7.4 0.8471
AT3G16720 ATL2 TOXICOS EN LEVADURA 2 (.1) Lus10042277
[exp]
10.5 0.7694
AT5G16770 MYB ATMYB9 myb domain protein 9 (.1.2) Lus10011031
[exp]
19.1 0.8019
AT5G05340 Peroxidase superfamily protein... Lus10006534
[exp]
19.8 0.7944
AT3G58190 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, l... Lus10000613
[exp]
21.6 0.8257
AT2G05940 RIPK RPM1-induced protein kinase, P... Lus10008110
[exp]
37.9 0.7847
AT4G11650 ATOSM34 osmotin 34 (.1) Lus10006690
[exp]
38.3 0.8229
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10029182
[exp]
39.1 0.7513
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10010874
[exp]
39.7 0.8027

Lus10039776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.