Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 266 / 5e-84 Plant protein of unknown function (DUF247) (.1) AT3G50120 250 / 1e-77 Plant protein of unknown function (DUF247) (.1) AT3G50170 249 / 2e-77 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 243 / 2e-75 Plant protein of unknown function (DUF247) (.1) AT3G50140 238 / 5e-73 Plant protein of unknown function (DUF247) (.1) AT4G31980 232 / 2e-69 unknown protein AT3G50130 224 / 2e-67 Plant protein of unknown function (DUF247) (.1) AT3G50180 223 / 1e-66 Plant protein of unknown function (DUF247) (.1) AT2G36430 208 / 2e-62 Plant protein of unknown function (DUF247) (.1) AT3G47250 203 / 4e-60 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 607 / 0 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 367 / 8e-124 AT4G31980 251 / 5e-76 unknown protein Lus10010065 [exp] 365 / 3e-123 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 357 / 7e-120 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 345 / 2e-115 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 340 / 2e-113 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 244 / 2e-76 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 238 / 4e-73 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 220 / 6e-67 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146400 [exp] 459 / 2e-159 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 451 / 2e-157 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 424 / 1e-146 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 356 / 7e-120 AT4G31980 217 / 1e-63 unknown protein Potri.013G146600 [exp] 352 / 3e-118 AT4G31980 236 / 1e-70 unknown protein Potri.017G145100 [exp] 323 / 7e-107 AT4G31980 225 / 1e-66 unknown protein Potri.010G144200 [exp] 263 / 5e-84 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 252 / 2e-79 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 245 / 2e-76 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 244 / 2e-75 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10039777 pacid=23165014 polypeptide=Lus10039777 locus=Lus10039777.g ID=Lus10039777.BGIv1.0 annot-version=v1.0 ATGGCGACCCAATCAGCCGAAGAAACCTGGCTAAATTCCATCAAAAGCGAACTAGGAAAACTCTCCCCGCCGTCCTTGAGTTGGACCATTTGCAGTGTTC CGGCGAAGCTCCGGAACACCAACGAGGCCGCATACATCCCTAACATCGTCTCCATCGGACCAATCCACCACGGCGTCGAAAGCTTGAAATCAATGGAAGC TCACAAATGGCTGTACATGCACTCCCTCCTGGAGCGAACTCAGAACGCCGTACCCACTCTGGACGCCTGTGGCAAGGCCATGCTCGGATTCACCAACAAC GTACGCGCCTCTTACGCCGAGCCGGTCCACTGCAACGACACCCAACTCGCCGAGATCATGCTCATTGACGGCTGCTTCATCGTGGAGCTCTTCCTGCGTT GCTCCATCCCGGATCTGCAGAGCCAGACCGACCCGATTTTCACCACTTCTTGGATGGTTCTGACACTCCAGCGCGATTTGGCGCTGCTGGAGAACCAGAT CCCTTTATTCGTGCTCGACTGGCTGTTTAATTTAACGGCCAGCGATCACATGACTCCTTCGTTGCCTGATCTGGCCCTCCGGTTCTTCCGGTCCTCGATC AACAATCACGTCATGGAGGAAACCCTAGGCGTCGGGAGCAGGAGGAGGAGCCACCACCTTCTCCACCTGATCCACAACTGCTACTTCCCGTCCTCGCCGA GGGTCGAAGCCAAGAGGAAAGAGAAAGGCAACCTGGAAATGATCCACTGCGCGGCTCTGCTAACGGATGCAGGAATAGAGTTCGTGAAGGACGAGAAGAG GTCTCTGTTCGACCTGGACTTCAAGAACGGGGTGTTCAGGATCGCGCCGCTCAGGGTGCACGACTCGACCGACTCGCTATTCAGGAACTTGATCGCGTTC GAGCAGTGCGTCCAGGAGAGCTCCCAGTATGTTACGTCGTACATTCTGTTGATGGACCGCCTGATCGACACTACGGAGGATGTGGAGGTATTGGAGCGGC AGAGGATCATAGCCAACGACTTGGGAGGGAGGGAAGAAGTGACGGCGACGTTTAACAACATTTGTAAGCAGACTGTGCTCAGAGATTTTTACTTTGACGG AGTTTGCGAGAGGGTGAACGAGTACTATCAACGGCCGTGGAATCGCTACAAGGCGGCGTTTCGGAGGGATTATTGTACGACTCCTTGGACCATCATATCT GTGATCGCTGGTTCTGTTCTTATCACCTTGACAACGGTCCAGACTCTGTACTCTGTATTCTCTTACTATCCCCACTGA
AA sequence Show only first row Show all	>Lus10039777 pacid=23165014 polypeptide=Lus10039777 locus=Lus10039777.g ID=Lus10039777.BGIv1.0 annot-version=v1.0 MATQSAEETWLNSIKSELGKLSPPSLSWTICSVPAKLRNTNEAAYIPNIVSIGPIHHGVESLKSMEAHKWLYMHSLLERTQNAVPTLDACGKAMLGFTNN VRASYAEPVHCNDTQLAEIMLIDGCFIVELFLRCSIPDLQSQTDPIFTTSWMVLTLQRDLALLENQIPLFVLDWLFNLTASDHMTPSLPDLALRFFRSSI NNHVMEETLGVGSRRRSHHLLHLIHNCYFPSSPRVEAKRKEKGNLEMIHCAALLTDAGIEFVKDEKRSLFDLDFKNGVFRIAPLRVHDSTDSLFRNLIAF EQCVQESSQYVTSYILLMDRLIDTTEDVEVLERQRIIANDLGGREEVTATFNNICKQTVLRDFYFDGVCERVNEYYQRPWNRYKAAFRRDYCTTPWTIIS VIAGSVLITLTTVQTLYSVFSYYPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50150			Plant protein of unknown funct...		Lus10039777 [exp]	0	1
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	1.4	0.8540
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10008564 [exp]	3.6	0.8857
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	5.3	0.7999
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	5.7	0.7701
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	10.7	0.8227
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	16.5	0.7869
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	24.8	0.8253
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	29.3	0.8474
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032682 [exp]	30.0	0.7567
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10018237 [exp]	32.2	0.7586

Compare expression of checked genes

Lus10039777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.