Plant FIBer expression Database

Lus10039778 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018550
[exp]
384 / 1e-137 ND /
Lus10039776
[exp]
226 / 5e-75 ND /
Lus10039781
[exp]
119 / 2e-33 ND /
Lus10018552
[exp]
104 / 1e-27 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G108500
[exp]
66 / 4e-13 ND /
Potri.019G108700
[exp]
60 / 5e-11 ND /
PFAM info
Representative CDS sequence
>Lus10039778 pacid=23165084 polypeptide=Lus10039778 locus=Lus10039778.g ID=Lus10039778.BGIv1.0 annot-version=v1.0
ATGGAGAGATCAAACACCAAATCCGCTTCCGAATCAGCTCACCGGAACTCCTTCGCCGAGTACGCCCTTTTCAAATCCACCGGCTTCCCCTCCTCCGTTT
CCAACAACCGCATCCACCGCCATCCCGACGACGCCTTACTCGACATCGACGGCGAACCTTCCCCAACTTCTCCCACCACCTTCGCTCCGTCGCTATCAAT
CCCCGTCAGCCGCCACACCCGGCACATCGGACGACCGTCGACTGGACACTCCCCAATCGGCTCCCCTCAGTCAACTTCCGCTTTCTTCTCTGAGTTGAGC
TGCCACCTGGACCTAGTGGCGGCGGCGCGTAGGGAGCACGAATCATGCTCCACGGCGGAGGAGAAGAGAGAGTTCAAGTCACGGTGGGTGCCGATCTTGC
TGAACAGGCTGAAGGATCTGTCGGAGATGGAGGCGAAGAGTACGGTTGGGGTGGAGATCGCCGACACGGTGGATTTCTTAAAGACGCTATACCCGTCGGA
GTCTATTTGTAAGGAGATCGGAGAGATCAGTGACAAAAGCCGGCAAGGGGTGATTAAACTTCAAGAAGGGTTGTTGTTGGTTGACAAGGCGAAAGAGCAA
CTCCGATCTGCTCTCCACAGGAAGCTCTTCTCTCTTGAATGA
AA sequence
>Lus10039778 pacid=23165084 polypeptide=Lus10039778 locus=Lus10039778.g ID=Lus10039778.BGIv1.0 annot-version=v1.0
MERSNTKSASESAHRNSFAEYALFKSTGFPSSVSNNRIHRHPDDALLDIDGEPSPTSPTTFAPSLSIPVSRHTRHIGRPSTGHSPIGSPQSTSAFFSELS
CHLDLVAAARREHESCSTAEEKREFKSRWVPILLNRLKDLSEMEAKSTVGVEIADTVDFLKTLYPSESICKEIGEISDKSRQGVIKLQEGLLLVDKAKEQ
LRSALHRKLFSLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10039778
[exp]
0 1
AT2G05940 RIPK RPM1-induced protein kinase, P... Lus10034897
[exp]
1.4 0.9060
AT2G41640 Glycosyltransferase family 61 ... Lus10035441
[exp]
1.7 0.8915
AT5G52830 WRKY ATWRKY27, WRKY2... ARABIDOPSIS THALIANA WRKY DNA-... Lus10039295
[exp]
2.0 0.8794
AT5G49190 ATSUS2, SSA, SU... SUCROSE SYNTHASE FROM ARABIDOP... Lus10010308
[exp]
3.2 0.8982
AT1G21450 GRAS SCL1 SCARECROW-like 1 (.1) Lus10042776
[exp]
5.5 0.8545
AT1G02360 Chitinase family protein (.1) Lus10009968
[exp]
9.4 0.8432
AT3G23730 XTH16 xyloglucan endotransglucosylas... Lus10020773
[exp]
9.8 0.8491
AT1G20270 2-oxoglutarate (2OG) and Fe(II... Lus10005620
[exp]
11.2 0.8260
AT4G11650 ATOSM34 osmotin 34 (.1) Lus10006302
[exp]
12.0 0.7904
AT2G30970 ASP1 aspartate aminotransferase 1 (... Lus10025252
[exp]
12.2 0.8540

Lus10039778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.