Plant FIBer expression Database

Lus10039779 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018551
[exp]
213 / 5e-68 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10039779 pacid=23165389 polypeptide=Lus10039779 locus=Lus10039779.g ID=Lus10039779.BGIv1.0 annot-version=v1.0
ATGTGCCAAGAAAAAGTCGAAGCTACGGCTGAAACGTGGAGGTGGAGTCGAGCGGCACCAATGATGTCGTTCTTCCCGTCGACAACTAGACTGGTTGTTG
TCCCAAACCAGACGCAAGTGATTATCCCCGTAAAAGCGAAGAAGAAGTCAACACAGCCAAATCAGCCCTTCAAATCTCTTCGGATTTGCTTTCATCTGCC
AAATTGTTTCTCTCTTCATTCTCATATCTCCACGCAGTTTTCCCCGTCTTCCCCAATCTTATCTAAACCAATCGAAAGTCGTCGTCGTCGTCGTCGTCGG
AAGTATGGTGTCCCTGAGACTAAACGAGAACAGAAACGGCAGCGGCAGCGGAGCCAGCGGAGATCGGGGAAGAAGAGAGCAGAGGGATCAAGCTTCGAGT
CACCACGGCAGCAGAAGCATATCGCTAGAGCCCGACCACGCCGACGCTACCTAGAGCCCGACCACGCCGGCGCTACTGCCTTCATCGACGACATCGACTC
CGTCTCCTCTTTCCCTCCCTTGCGCGATGACCACCAGTCGTCGACGACTAATTTCGTCAATTCGTTCAGCCAGTTCAAACGGTGGCCCAGTCACCAACCG
TCGCCGCCGGATCCGGACCATCCGCTGCACAAATCGAGCTCCGCCCCTGTTTTCCACGAGAATCAGCTTGATGAGCGGCGATCGTATCGGTCGGCGGCGG
GAGATCTGAACGAGATTCGGATTTCCGACAGCGAAAAACTCGCTGCTGCTAATTTGGGATACACCAATAGCTTCACGAAAGATCGGATGCTGAAAATGGG
GGCTCTGTCTTCGCCATCGCCGTCTCCATCTCCTCCGTCTCCATCTCCTCCCCCTCCCCCGCCGCTGAATCCGTTCCGGACAGTGTCGGATTCTTCTTCT
TCGTCATCGGAAGTGACGACGCCGAAGTCAAAGACGGCGACTTCACACGTGGTGATTGGAGGTATTACTTGTCCGATGGTAAGTAAGCTCTCCCTGTTGC
GCCACCGGAGCAGCTTAAAGGAGAAGGTTAGTTGCATCAAGACCTGA
AA sequence
>Lus10039779 pacid=23165389 polypeptide=Lus10039779 locus=Lus10039779.g ID=Lus10039779.BGIv1.0 annot-version=v1.0
MCQEKVEATAETWRWSRAAPMMSFFPSTTRLVVVPNQTQVIIPVKAKKKSTQPNQPFKSLRICFHLPNCFSLHSHISTQFSPSSPILSKPIESRRRRRRR
KYGVPETKREQKRQRQRSQRRSGKKRAEGSSFESPRQQKHIARARPRRRYLEPDHAGATAFIDDIDSVSSFPPLRDDHQSSTTNFVNSFSQFKRWPSHQP
SPPDPDHPLHKSSSAPVFHENQLDERRSYRSAAGDLNEIRISDSEKLAAANLGYTNSFTKDRMLKMGALSSPSPSPSPPSPSPPPPPPLNPFRTVSDSSS
SSSEVTTPKSKTATSHVVIGGITCPMVSKLSLLRHRSSLKEKVSCIKT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10039779
[exp]
0 1
Lus10018550
[exp]
1.0 0.8524
Lus10018551
[exp]
2.0 0.8497
AT2G23320 WRKY WRKY15 WRKY DNA-binding protein 15 (.... Lus10041600
[exp]
2.4 0.8281
AT5G65520 Tetratricopeptide repeat (TPR)... Lus10012031
[exp]
9.4 0.8019
AT2G46080 unknown protein Lus10007920
[exp]
10.6 0.8030
AT1G72470 ATEXO70D1 exocyst subunit exo70 family p... Lus10013163
[exp]
12.2 0.8145
Lus10024821
[exp]
13.4 0.8043
AT1G01550 BPS1 BYPASS 1, Protein of unknown f... Lus10005326
[exp]
13.7 0.7972
AT5G42820 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H t... Lus10008648
[exp]
15.0 0.7535
AT2G23320 WRKY WRKY15 WRKY DNA-binding protein 15 (.... Lus10006261
[exp]
17.0 0.8041

Lus10039779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.