Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 278 / 1e-88 Plant protein of unknown function (DUF247) (.1) AT3G50170 266 / 2e-83 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 258 / 2e-80 Plant protein of unknown function (DUF247) (.1) AT3G50140 253 / 2e-78 Plant protein of unknown function (DUF247) (.1) AT4G31980 251 / 2e-76 unknown protein AT3G50160 242 / 8e-75 Plant protein of unknown function (DUF247) (.1) AT3G50180 243 / 3e-74 Plant protein of unknown function (DUF247) (.1) AT3G50130 237 / 4e-72 Plant protein of unknown function (DUF247) (.1) AT2G36430 228 / 6e-70 Plant protein of unknown function (DUF247) (.1) AT3G47250 226 / 1e-68 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039777 [exp] 622 / 0 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 435 / 3e-150 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 431 / 6e-149 AT4G31980 251 / 5e-76 unknown protein Lus10004516 [exp] 424 / 5e-146 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 396 / 4e-135 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 382 / 1e-129 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 266 / 1e-84 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 258 / 5e-81 AT4G31980 180 / 2e-49 unknown protein Lus10035568 [exp] 251 / 3e-78 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146400 [exp] 517 / 0 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 507 / 2e-179 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 458 / 5e-160 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 374 / 7e-127 AT4G31980 217 / 1e-63 unknown protein Potri.013G146600 [exp] 366 / 8e-124 AT4G31980 236 / 1e-70 unknown protein Potri.017G145100 [exp] 341 / 5e-114 AT4G31980 225 / 1e-66 unknown protein Potri.010G144200 [exp] 270 / 1e-86 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 267 / 6e-85 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 258 / 8e-82 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 258 / 1e-81 AT4G31980 317 / 1e-101 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10039780 pacid=23165371 polypeptide=Lus10039780 locus=Lus10039780.g ID=Lus10039780.BGIv1.0 annot-version=v1.0 ATGGATGGTGGACCAAGCGCGATCCAAACAGCCGACACAAACTGGCTGGAATCGATCAAAATCGAGCTCTCAGAGCTATCCCCTCTGTCCTCCAGCTGGA CGATCTGTAGAGTTCCGACAAAGCTCCGAAACACGAGCAAAGACGCCTACACTCCTCATATAGTCTCCGTCGGACCGATCCACCACGAGGAGAGGAGCTT GAAAGGAATGGAAGCTCACAAATGGAGGTACATGCTCTCCTTGCTGGAACGGACTCAGAACGCCGTCTCCACTCTCGACGCCTGCGGCAAGGCGATCCTC CGCTTCGACAACGACATCCGAGCTTCCTACGGCGAGTGGATCGACTACAGCAACACTGATCTCGCTAAGATGATGCTCCTCGACGGCTGCTTCATCTTGG AGCTGTTTTTAAGGTACTCGAATCCGGATCCGAAGCTCCAGAGCGATCCGATTTTCACCACTTCTTGGATGATTCTCACTCTCCAGCGAGATCTGGCGCT GCTGGAGAATCAGATTCCGTTCTTCGTTCTCGAATGGCTTTTCAATTTCACAGTGAGGAGGACGGCGAACGGACTTTCGACTCCTTCGTTGTCGGATCTG GCGTTACGATTCTTCCGATCGTCGATTGACAACGTCAGCGAGGAGACCCTGGGCACCGGAAGTCGGCAGAACAGTCACCACCTGCTCCACCTGATTCACA ACTGCTACTTCCCCTCTTCCCCCAGGATCGAAGTAGGAGGGAAAGGGAACAACAGCAACATCGAGTTGATCCACTGCGCCGCGGCGCTCAAGGAGGCCGG GGTCGAGTTCGAGAAAGACGAGACGAGGTCGCTGTTCGATTTGGAATTCAAGAACGGAGTGTTCAGGATCCCGCCGTTGAGGGTGCACGACTCGACAGAC TCGCTGTTTCGAAACTTCATCGCGTTCGAGCAGTGCTTCCAGGAGAGCTCCCAGTACATAACCTCCTACGTCCTGTTGATGGACCGGCTGATCGACACCG CGAAAGACGTGGAGGTTCTGGAGCGGAGGCGGATCATCGCCAATGACTTGGGAGGGAGGGAGGATGTGGCGGCGATGTTTAATAACATCTGTAAGCAGAT TGTGCTTAGGGATTTTTACTTCGCCGGAGTTTGCGAGAAGGTGAATGAGTATTATCACCGGCGGTGGAATCGGTACAAGGCGTCGTTGAAAAGGGATTAC TGTACGAATCCCTGGACGATTATATCGTTGTTCGCCGGTTTCGTTCTGATTTCCTTGACGGCGGTGCAGACTGTGTTCTCCATACTCGCTTACTATCAAG GAAATTAA
AA sequence Show only first row Show all	>Lus10039780 pacid=23165371 polypeptide=Lus10039780 locus=Lus10039780.g ID=Lus10039780.BGIv1.0 annot-version=v1.0 MDGGPSAIQTADTNWLESIKIELSELSPLSSSWTICRVPTKLRNTSKDAYTPHIVSVGPIHHEERSLKGMEAHKWRYMLSLLERTQNAVSTLDACGKAIL RFDNDIRASYGEWIDYSNTDLAKMMLLDGCFILELFLRYSNPDPKLQSDPIFTTSWMILTLQRDLALLENQIPFFVLEWLFNFTVRRTANGLSTPSLSDL ALRFFRSSIDNVSEETLGTGSRQNSHHLLHLIHNCYFPSSPRIEVGGKGNNSNIELIHCAAALKEAGVEFEKDETRSLFDLEFKNGVFRIPPLRVHDSTD SLFRNFIAFEQCFQESSQYITSYVLLMDRLIDTAKDVEVLERRRIIANDLGGREDVAAMFNNICKQIVLRDFYFAGVCEKVNEYYHRRWNRYKASLKRDY CTNPWTIISLFAGFVLISLTAVQTVFSILAYYQGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50150			Plant protein of unknown funct...		Lus10039780 [exp]	0	1
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	3.0	0.8729
AT5G25930			Protein kinase family protein ...		Lus10006028 [exp]	3.7	0.8740
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	7.2	0.8859
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	11.1	0.8551
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10030025 [exp]	14.3	0.8348
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	16.5	0.8340
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	17.9	0.8238
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	22.6	0.8190
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011861 [exp]	25.0	0.8137
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	28.2	0.8260

Compare expression of checked genes

Lus10039780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.