Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018552 [exp] 259 / 1e-88 ND / Lus10039778 [exp] 112 / 6e-31 ND / Lus10018550 [exp] 111 / 2e-30 ND / Lus10039776 [exp] 99 / 1e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G108500 [exp] 62 / 5e-12 ND / Potri.019G108700 [exp] 55 / 2e-09 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039781 pacid=23165319 polypeptide=Lus10039781 locus=Lus10039781.g ID=Lus10039781.BGIv1.0 annot-version=v1.0 ATGGACAGAAGAACCAAAATACACAAATCCTCCTCCGCCGCCGACCTGACGCCGGCCAACCGCAACTCCTTCGCCGACTACGCCCTCGCCAAATCAACAG CAGCCCACCTTCAAACATTCCCTGCTCCGGTAGACGACCTACCCGACATCGACGGCGAACCCAATTTCTTCCTCCCATCCAGTTCCACAGCTCCTCTGCC TCCGCCAATTACAAAGCCAAAAGCTCCATGCTTTTCATCGGATTCGAGGCGTCTGGATCTAACCGCTGCAAGGAGGAAGTACGATGAGAACAGCGGAAAC AGCAGAACAGAGTCCCAGAAGGCAGAGCTGAAACGCGCCGTTTTGAGACGATTGAAGGAGTTGTCAGAGATGGAAGCGAACAGCAAAGTCGCCATCGAGA TCGCCGAAGCCGCCGATTTCCTGAAGGCTCTGTACGGCTCCGATTCGGCTCTGATTGAAATAAGCGAGAATAGCCGGGAAGGAGTCATGCGGTTGCAGGA AGGTCAGCTGCTTGTTAAGAAATCGCAGGACCAGCTGCGATCTCTACTTCGCCATAAGCTTTTCTCCCTTGATTAA
AA sequence Show only first row Show all	>Lus10039781 pacid=23165319 polypeptide=Lus10039781 locus=Lus10039781.g ID=Lus10039781.BGIv1.0 annot-version=v1.0 MDRRTKIHKSSSAADLTPANRNSFADYALAKSTAAHLQTFPAPVDDLPDIDGEPNFFLPSSSTAPLPPPITKPKAPCFSSDSRRLDLTAARRKYDENSGN SRTESQKAELKRAVLRRLKELSEMEANSKVAIEIAEAADFLKALYGSDSALIEISENSREGVMRLQEGQLLVKKSQDQLRSLLRHKLFSLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039781 [exp]	0	1
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	3.0	0.9079
AT5G18310			unknown protein		Lus10042520 [exp]	3.3	0.8879
AT1G07160			Protein phosphatase 2C family ...		Lus10026381 [exp]	4.6	0.9141
AT3G61180			RING/U-box superfamily protein...		Lus10012427 [exp]	6.9	0.8830
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	8.4	0.8979
AT5G38700			unknown protein		Lus10002433 [exp]	9.1	0.9130
					Lus10029449 [exp]	10.4	0.8670
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10021855 [exp]	10.9	0.8418
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	12.0	0.9050
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10008126 [exp]	12.1	0.8719

Compare expression of checked genes

Lus10039781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.