Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03320 262 / 3e-87 AtTic20-IV, TIC20-IV translocon at the inner envelope membrane of chloroplasts 20-IV (.1) AT1G04940 172 / 2e-52 AtTic20-I, atTIC20, TIC20 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) AT1G04945 158 / 7e-44 HIT-type Zinc finger family protein (.1.2.3) AT2G47840 41 / 0.0005 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010636 [exp] 156 / 4e-46 AT1G04940 338 / 9e-118 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Lus10033195 [exp] 153 / 4e-45 AT1G04940 341 / 7e-119 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G108800 [exp] 301 / 2e-102 AT4G03320 283 / 2e-95 translocon at the inner envelope membrane of chloroplasts 20-IV (.1) Potri.002G031800 [exp] 171 / 5e-52 AT1G04940 363 / 1e-127 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Potri.005G231400 [exp] 168 / 1e-50 AT1G04940 360 / 2e-126 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09685 [flax] [poplar] DUF4870 Domain of unknown function (DUF4870)
Representative CDS sequence Show only first row Show all	>Lus10039783 pacid=23165272 polypeptide=Lus10039783 locus=Lus10039783.g ID=Lus10039783.BGIv1.0 annot-version=v1.0 ATGCTGCTTTACTGTAATATATCTGTGATTTCTCTTCGCAATTTGATTCGGGAAATTCACTGTAAATTGATCAGGTATAGGGATACGATCACAAGAAGAG GAATACACGACTCTTTGAATGGAAAATCCAGCATCGTGTGCCAGTCTAACTTTGCTGGATTGCCTAGCTTGTCATTAACGTCAAACGGAACCAATAAGCT TCAACATGTAACCACTTTTAAAGATAAGTCACTTTGGGACCTCTTCTCTACACCAGTCTCACGTTTCGGAGATCAAGATAGCGGGTCATCAAACAAGCTT CCCAAGCTACCCAGAAGACGTTCCTTAAAACCCACAGCGGCATACAAGAACTTCAACCACCCAGTCTTCGCCGAGAAGCCAGAGTGGTGGTGGAGGACCT TAGCATGCGTCCCTTACTTGATCGCCTTACAAATATCAGACGCAGGGTTCTACATCCAGCCCTTGGTAGAACACTACCGGTCCCTCGAGAACATAATCTA CTTCATCCCGGGAGCCATCACGAGGTTACCGCCCTGGTTCACGATGATCTACTGCTACTTCGCCTACCTCGGGGTGGTGAAGAATAAAGAGTGGCCTCAC TTCATCAGGTTCCATCTCATGATGGGGATGCTGCTGGAGACTTCTCTGCAGATTGTTTGGTGGACGAGTAACTTCTTCCCTCTCATTCACTACAACGGCA AGTTCGGTATGTACTATTGGGCCGGGATCGGGTTTGCGTACATGTTGATCTTGCTGCAGTGTGTTCGAGGCGCTCTTGCTGGTGGGTATGCTTATATTCC GTTCATCTCTGAGAATGCTGAAATTCATACCAAGTTCAGTATCGGAGGGTTCCAAAGGCCTTGGTGA
AA sequence Show only first row Show all	>Lus10039783 pacid=23165272 polypeptide=Lus10039783 locus=Lus10039783.g ID=Lus10039783.BGIv1.0 annot-version=v1.0 MLLYCNISVISLRNLIREIHCKLIRYRDTITRRGIHDSLNGKSSIVCQSNFAGLPSLSLTSNGTNKLQHVTTFKDKSLWDLFSTPVSRFGDQDSGSSNKL PKLPRRRSLKPTAAYKNFNHPVFAEKPEWWWRTLACVPYLIALQISDAGFYIQPLVEHYRSLENIIYFIPGAITRLPPWFTMIYCYFAYLGVVKNKEWPH FIRFHLMMGMLLETSLQIVWWTSNFFPLIHYNGKFGMYYWAGIGFAYMLILLQCVRGALAGGYAYIPFISENAEIHTKFSIGGFQRPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	0	1
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	2.0	0.9165
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	3.7	0.9143
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	3.9	0.9159
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	4.2	0.9145
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	5.7	0.9160
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10040239 [exp]	6.6	0.8953
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	9.7	0.8974
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	12.8	0.9073
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	12.8	0.8880
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	15.2	0.8891

Compare expression of checked genes

Lus10039783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.