Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20810 439 / 1e-152 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 253 / 3e-80 GAUT11 galacturonosyltransferase 11 (.1) AT5G47780 168 / 2e-47 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 158 / 2e-43 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 149 / 4e-40 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 142 / 5e-38 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 132 / 2e-34 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G30575 128 / 6e-33 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 123 / 4e-31 GAUT6 galacturonosyltransferase 6 (.1.2) AT3G02350 113 / 8e-28 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018554 [exp] 593 / 0 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10007979 [exp] 263 / 5e-84 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10013506 [exp] 259 / 3e-82 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10039119 [exp] 166 / 3e-46 AT5G47780 691 / 0.0 galacturonosyltransferase 4 (.1) Lus10038739 [exp] 164 / 2e-45 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 161 / 6e-44 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 161 / 7e-44 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009311 [exp] 159 / 7e-44 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 159 / 2e-43 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G108900 [exp] 501 / 4e-177 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 459 / 1e-160 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.012G064500 [exp] 275 / 1e-88 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1) Potri.015G060800 [exp] 272 / 2e-87 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.016G001700 [exp] 180 / 2e-51 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 160 / 4e-44 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 159 / 6e-44 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.014G073800 [exp] 156 / 1e-42 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.006G001100 [exp] 153 / 8e-42 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.005G218900 [exp] 132 / 2e-34 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039784 pacid=23165360 polypeptide=Lus10039784 locus=Lus10039784.g ID=Lus10039784.BGIv1.0 annot-version=v1.0 ATGAGGCGGAGGCCGGTGGATTTCCGACGGCCGGTCAGGAGGAGATTTTCGAATGTGATGTGGTGGACGCTGTGTGGGATAGTGGTGCTGCTGTTCATAG TGATTTTTAGCAAAGAGAGCCAGATTGAATCCAGGCACGCCATCAGTAAGAATGCTGCCAGACACGAAAAATTCATGGAAGGACTAAACATCACAGACGA AATGCTGAGTCCCAACTCCGTCACCAGACAGCTCAGCGACCAAATATCTCTCGCCAAAGCATTTGTGGTGATCGCAAAAGAAAACAACAACCTCCAGTTT GCTTGGGAATTAAGCGCCCAGATCCGCAACTCACAAGTTCTTCTCTCAAGCGCTGCAACAAGGCGAGTCCCCTTAACCACAAGAGAATCCGAGGCTGCAA TTCGCGACATGGCACTTCTTCTCTTCCAAGGACAGCAACTCCATTATGATAGCGCTACTATGATCATGAAACTGAAAGCCAAAATTCAAGGTCTGGAAGA ACAGATGAGCTCCGTGAGCGAGAAAAGCTCCAAGTACGGACAAATTGCTGCCGAGGAAGTCCCGAAAGGTCTGTACTGTATTGGTATTCGGTTGACTACA GTATGGTTCAGAAACTTGAGCTTGCAGAGGAATATCGACGAGAGAATGCAGATCGAAGCGAAACTTCGAGACAGCAGTTTGAGCCATTTCTGCGTCTTCT CCGACAACATTGTTGCTACATCGGTGGTAATCAACTCGACAGCTATAAACTCGAAGAATCCAGATAGAGTAGTGTTCCATATTGTAACAGATGAGATCAA CTACCCGGCGATGAGAGCCTGGTTTGGGACAACCGAATTTCGAGGAGTGACTGTTGAAGTTCAGAAATTTGACGACTTCAAATGGCTGAATGCTTCGTAT GTTCCGGTCCTGAAGCAGCTGCAGGATGCAGAAACTAAAAGCTACTACAGAAGGATCTATCGGCGCTATTTACGATCGATTTGA
AA sequence Show only first row Show all	>Lus10039784 pacid=23165360 polypeptide=Lus10039784 locus=Lus10039784.g ID=Lus10039784.BGIv1.0 annot-version=v1.0 MRRRPVDFRRPVRRRFSNVMWWTLCGIVVLLFIVIFSKESQIESRHAISKNAARHEKFMEGLNITDEMLSPNSVTRQLSDQISLAKAFVVIAKENNNLQF AWELSAQIRNSQVLLSSAATRRVPLTTRESEAAIRDMALLLFQGQQLHYDSATMIMKLKAKIQGLEEQMSSVSEKSSKYGQIAAEEVPKGLYCIGIRLTT VWFRNLSLQRNIDERMQIEAKLRDSSLSHFCVFSDNIVATSVVINSTAINSKNPDRVVFHIVTDEINYPAMRAWFGTTEFRGVTVEVQKFDDFKWLNASY VPVLKQLQDAETKSYYRRIYRRYLRSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039784 [exp]	0	1
AT4G01400			unknown protein		Lus10002677 [exp]	5.2	0.8733
AT3G19870			unknown protein		Lus10030556 [exp]	7.2	0.8725
AT1G48110		ECT7	evolutionarily conserved C-ter...		Lus10018343 [exp]	8.9	0.8506
AT3G19870			unknown protein		Lus10012903 [exp]	10.8	0.8622
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	11.6	0.8597
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	13.6	0.8660
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	14.4	0.8513
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	17.2	0.8509
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	20.8	0.8566
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	21.9	0.8190

Compare expression of checked genes

Lus10039784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.