Plant FIBer expression Database

Lus10039785 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20810 290 / 3e-97 GAUT10, LGT4 galacturonosyltransferase 10 (.1)
AT1G18580 221 / 2e-70 GAUT11 galacturonosyltransferase 11 (.1)
AT3G61130 206 / 5e-64 GAUT1, LGT1 galacturonosyltransferase 1 (.1)
AT4G38270 203 / 8e-63 GAUT3 galacturonosyltransferase 3 (.1.2)
AT5G47780 199 / 2e-61 GAUT4 galacturonosyltransferase 4 (.1)
AT3G25140 193 / 1e-59 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
AT3G02350 192 / 3e-59 GAUT9 galacturonosyltransferase 9 (.1)
AT2G46480 171 / 2e-51 GAUT2, LGT2 galacturonosyltransferase 2 (.1)
AT3G01040 162 / 4e-48 GAUT13 galacturonosyltransferase 13 (.1.2)
AT5G15470 159 / 7e-47 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018554
[exp]
310 / 3e-105 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
Lus10007979
[exp]
228 / 5e-73 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1)
Lus10013506
[exp]
223 / 2e-71 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1)
Lus10041389
[exp]
205 / 1e-63 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1)
Lus10009311
[exp]
204 / 3e-63 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1)
Lus10036540
[exp]
204 / 1e-62 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1)
Lus10038739
[exp]
201 / 6e-62 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1)
Lus10022766
[exp]
191 / 1e-61 AT3G25140 568 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Lus10026546
[exp]
200 / 3e-60 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G108900
[exp]
301 / 1e-101 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1)
Potri.013G146200
[exp]
301 / 1e-101 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1)
Potri.015G060800
[exp]
228 / 4e-73 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1)
Potri.012G064500
[exp]
218 / 3e-69 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1)
Potri.014G073800
[exp]
204 / 7e-63 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1)
Potri.002G151400
[exp]
203 / 9e-63 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1)
Potri.004G206000
[exp]
201 / 7e-62 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2)
Potri.016G001700
[exp]
199 / 2e-61 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1)
Potri.002G246500
[exp]
196 / 7e-61 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Potri.017G106800
[exp]
194 / 3e-60 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01501 Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence
>Lus10039785 pacid=23165152 polypeptide=Lus10039785 locus=Lus10039785.g ID=Lus10039785.BGIv1.0 annot-version=v1.0
ATGGAGACTTTCCACAGGTACCATAAGTATCTGAACTACTCTCACCCACTAATTCGTGAGCATTTCGATCCGGATGCTTGTGGATGGGCTTTCGGGATGA
ACGTGTTTGATTTGGTCGAATGGAGGAAAAGGAACGTCACTTCGATATACCACTACTGGCAGGAAAAGAACGTGGACCGGACTCTTTGGAAGCTCGGAAC
TTTACCGCCAGGGCTTCTCACGTTCTACGGGTTGACAGAGCCGTTGGAACCCTCGTGGCACGTGCTGGGACTCGGGTACACAAATGTCGATCCTCGAGTG
ATCGAGAAGGGAGCGGTTTTGCACTTCAATGGAAACTCGAAGCCGTGGCTGAAGATTGGGATGGAAAAGTATAAGCCTTTGTGGGAGAAGTATGTAGATT
ACTCTCACCCTTTGTTGCAGGAATGCAACTTCCATTGA
AA sequence
>Lus10039785 pacid=23165152 polypeptide=Lus10039785 locus=Lus10039785.g ID=Lus10039785.BGIv1.0 annot-version=v1.0
METFHRYHKYLNYSHPLIREHFDPDACGWAFGMNVFDLVEWRKRNVTSIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLEPSWHVLGLGYTNVDPRV
IEKGAVLHFNGNSKPWLKIGMEKYKPLWEKYVDYSHPLLQECNFH

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20810 GAUT10, LGT4 galacturonosyltransferase 10 (... Lus10039785
[exp]
0 1
AT1G19910 AVA-2PE, ATVHA-... VACUOLAR-TYPE H+ ATPASE C2, AT... Lus10010618
[exp]
4.0 0.8351
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Lus10003523
[exp]
7.1 0.8408
AT3G16050 A37, ATPDX1.2 ARABIDOPSIS THALIANA PYRIDOXIN... Lus10011450
[exp]
8.2 0.8496
AT3G08590 iPGAM2 2,3-biphosphoglycerate-indepen... Lus10031877
[exp]
9.6 0.8486
AT1G19910 AVA-2PE, ATVHA-... VACUOLAR-TYPE H+ ATPASE C2, AT... Lus10033179
[exp]
12.0 0.8037
AT5G13490 AAC2 ADP/ATP carrier 2 (.1.2) Lus10016417
[exp]
15.4 0.8047
AT2G04280 unknown protein Lus10041091
[exp]
17.8 0.8211
AT2G04280 unknown protein Lus10036415
[exp]
19.1 0.8052
AT3G04580 EIN4 ETHYLENE INSENSITIVE 4, Signal... Lus10042549
[exp]
21.0 0.7687
AT1G05070 Protein of unknown function (D... Lus10035288
[exp]
21.2 0.7761

Lus10039785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.