Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018556 [exp] 510 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G109200 [exp] 187 / 1e-53 ND / Potri.013G145900 [exp] 184 / 1e-52 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039787 pacid=23165358 polypeptide=Lus10039787 locus=Lus10039787.g ID=Lus10039787.BGIv1.0 annot-version=v1.0 ATGGCGATCAAGGGGAACAACAGCAGCGGCAGCAGCAACAATGGCGGAAACAGAGGAAGGCCGTACGGAGTGATGTTGCTGATAGCATTTGGTGCTGCTT TGTTGGGAGTTTTGGTTGTTCATAAGCTTAGAGAAAGGCGAATCTTCAACATCTTGGTCACTGAGAAAGAACAGCAGCTCTATTCTCTTCACCTTATCTT ACAGAAGGAAAGAGAAGAGAGCAATGAAATGAGGAAGAAGACTGAAGATATGAAGGCCAAGTTGGAGAAATTAAGGACTCAGAAGATGGAGCTTGACCGA AAAGTTCTCGAGATGCAATCCACCATCGATTCCTTGAAAGACGAAGGCAAGGCATTGGAGACCGCTGTCGAGGAGAAACAGAACGAGATCAAGTCGCTGA AGGAGAATGATGCCACTCATGATGGCCAGAAGGAGAAGAACGATGTTCGAGTTGCATTTCTCGAGGAGAGTGTGAAGCAGAAGGAAGCCAAGATTCAGGA GCTGAAGCGTCGGCTCGAAGATCCTGTCAAGGTGTGGTCGGTGGGTTCGGATGATCCTTCAAACAGTGTGAATTCGAACGGGACGAAGGTGGAAATCGGG GGTCAGAATGGTAATTCGACGAATGGTGATGGCGTGACTGACAAGTTACCCGAGGGGGAGAGTGGCAGAGGGACTGATAGGAGGAGGTTGTCAAGAGACG AGCAGTTGCTTGCGGAAGAAGTAAAAAACATTACCAACACTTATTCTGATGCTGGTAATGTAAACAGCATGAACAATGTCAGCAAGCACATCATCAACAG CGCCAGTGCACACAACGATTCTGTCGAGAACATCGGCGAAGTTGAGAGTACCGGGAAGAGGAAAAATGTCCATTCTTCTAGAAGAGCTAGAGGAAAGAAA TGGAGAACGCTTGCTAGGAAGAGATGGTTGGGGAACAACATGAGCCATGAAAATGGTGCTGCGATAGATGGAGCAGAATCAGCATCACAACTTCGAAACT CGGTAGTCCACAAACTCGAATCTGATCAGGCTCGGTCCGGTTCTGAAGGCACGGGATTTGAATCGGAGAAGGGAGTGGAAGATGCAGATTTGATGTACCA GGAAGCGGAGTCTGATTCTGATCCATTGAGAAGTCGGAACACGTAA
AA sequence Show only first row Show all	>Lus10039787 pacid=23165358 polypeptide=Lus10039787 locus=Lus10039787.g ID=Lus10039787.BGIv1.0 annot-version=v1.0 MAIKGNNSSGSSNNGGNRGRPYGVMLLIAFGAALLGVLVVHKLRERRIFNILVTEKEQQLYSLHLILQKEREESNEMRKKTEDMKAKLEKLRTQKMELDR KVLEMQSTIDSLKDEGKALETAVEEKQNEIKSLKENDATHDGQKEKNDVRVAFLEESVKQKEAKIQELKRRLEDPVKVWSVGSDDPSNSVNSNGTKVEIG GQNGNSTNGDGVTDKLPEGESGRGTDRRRLSRDEQLLAEEVKNITNTYSDAGNVNSMNNVSKHIINSASAHNDSVENIGEVESTGKRKNVHSSRRARGKK WRTLARKRWLGNNMSHENGAAIDGAESASQLRNSVVHKLESDQARSGSEGTGFESEKGVEDADLMYQEAESDSDPLRSRNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039787 [exp]	0	1
AT1G76140			Prolyl oligopeptidase family p...		Lus10021834 [exp]	4.2	0.6396
AT5G63180			Pectin lyase-like superfamily ...		Lus10022310 [exp]	17.4	0.6157
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018890 [exp]	22.2	0.5661
					Lus10040545 [exp]	40.5	0.5954
					Lus10034814 [exp]	42.0	0.5620
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	61.8	0.5345
AT5G06740			Concanavalin A-like lectin pro...		Lus10032783 [exp]	67.3	0.5445
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	67.7	0.5307
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	68.2	0.5541
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	70.9	0.5585

Compare expression of checked genes

Lus10039787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.