Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20830 344 / 4e-119 transferases;folic acid binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018558 [exp] 538 / 0 AT2G20830 354 / 3e-123 transferases;folic acid binding (.1.2.3) Lus10018559 [exp] 303 / 9e-103 AT2G20830 288 / 6e-97 transferases;folic acid binding (.1.2.3) Lus10039790 [exp] 296 / 3e-100 AT2G20830 285 / 6e-96 transferases;folic acid binding (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145700 [exp] 456 / 3e-163 AT2G20830 384 / 7e-135 transferases;folic acid binding (.1.2.3) Potri.019G104700 [exp] 315 / 2e-107 AT2G20830 288 / 5e-97 transferases;folic acid binding (.1.2.3) Potri.013G145600 [exp] 302 / 1e-102 AT2G20830 295 / 2e-99 transferases;folic acid binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07837 [flax] [poplar] FTCD_N Formiminotransferase domain, N-terminal subdomain
Representative CDS sequence Show only first row Show all	>Lus10039789 pacid=23165135 polypeptide=Lus10039789 locus=Lus10039789.g ID=Lus10039789.BGIv1.0 annot-version=v1.0 ATGCTGATGAAGCAGATGCTTGCTTGCTGCTGCAAGGTGTACATATCCGAAAGCCGAAACAAGGCAGCACTGGACTCAATCGAAAGAGCAGCAAAGCTGT TCCCCGAAACACCAATCATCAACAAGTTTGAAGACGTGACATACAACAGAGTCGGATACACTCTTGTCGGAAAGTTAGCTCCAGATAGCTCTCCATTAAA GTGTTCTGTGTTTGCTATGATTAAAGCTGCATTCGAAACGATCGACCTCGAGCACCATTCCGGTACTCATCCTAGACTCGGTGTCGTGGACCATATATGT TTCCATCCACTCGCTCAAGCTTCTCTGGATCAGGCTGCTTCCATTGCTATGTCCTTGGCAGTTAAAGTTGGTTCAGAACTCGAAGTCCCGACTTTCCTGT ACGGAGCTGCCAGCTCCGAAGGGAAGAAGCTGGATGCAATCAGGAGAGAAATGGGATACTTCAAGCCGAGCTCCGGAAACCAGTGGGTTGGCATTGGTAG CTCGATTCGATCGGATTCCTTGCCCCTGAAGCCAGACGAAGGACCTCCTCGAGCGAATCGAACTAAAGGCGTCCTCGTCATTGGAGCAACTAAGTGGGTT GATAACTACAATGTCCCCGTGTACTCGACTGATATGACCGCGATTCGCAGAATCGCGAAAAGGGTAAGCACGAGAGGCGGCGGGCTGCCTTCTGTTCAGG CAATGGCACTCGCTCACGAGATCGATGTCATCGAGGTCGCTTGTAACCTGTTGGAACCGAGTGATGTCGGAGGAGACAGAGTTCAGCGAGAAGTCGAAAC TCTCGGCGAAGAAGAAGGGATCGCTGTGGGGAAAGGGTATTACACTGATTTCCCTCAGGAGAAGATACTTCAGAAGGTTTGCAGCATCAATGGCTAG
AA sequence Show only first row Show all	>Lus10039789 pacid=23165135 polypeptide=Lus10039789 locus=Lus10039789.g ID=Lus10039789.BGIv1.0 annot-version=v1.0 MLMKQMLACCCKVYISESRNKAALDSIERAAKLFPETPIINKFEDVTYNRVGYTLVGKLAPDSSPLKCSVFAMIKAAFETIDLEHHSGTHPRLGVVDHIC FHPLAQASLDQAASIAMSLAVKVGSELEVPTFLYGAASSEGKKLDAIRREMGYFKPSSGNQWVGIGSSIRSDSLPLKPDEGPPRANRTKGVLVIGATKWV DNYNVPVYSTDMTAIRRIAKRVSTRGGGLPSVQAMALAHEIDVIEVACNLLEPSDVGGDRVQREVETLGEEEGIAVGKGYYTDFPQEKILQKVCSING

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20830			transferases;folic acid bindin...		Lus10039789 [exp]	0	1
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10008191 [exp]	6.3	0.8403
AT2G43945			unknown protein		Lus10020220 [exp]	9.9	0.8229
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	9.9	0.8402
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10027434 [exp]	10.2	0.8267
AT2G04360			unknown protein		Lus10000124 [exp]	10.7	0.8082
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10038077 [exp]	12.2	0.7331
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	13.0	0.8610
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	16.6	0.8400
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10007104 [exp]	17.9	0.8217
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	18.3	0.8285

Compare expression of checked genes

Lus10039789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.