Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20830 285 / 8e-96 transferases;folic acid binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018559 [exp] 612 / 0 AT2G20830 288 / 6e-97 transferases;folic acid binding (.1.2.3) Lus10039789 [exp] 308 / 7e-105 AT2G20830 344 / 2e-119 transferases;folic acid binding (.1.2.3) Lus10018558 [exp] 290 / 1e-97 AT2G20830 354 / 3e-123 transferases;folic acid binding (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G104700 [exp] 452 / 3e-161 AT2G20830 288 / 5e-97 transferases;folic acid binding (.1.2.3) Potri.013G145600 [exp] 437 / 1e-155 AT2G20830 295 / 2e-99 transferases;folic acid binding (.1.2.3) Potri.013G145700 [exp] 333 / 1e-114 AT2G20830 384 / 7e-135 transferases;folic acid binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07837 [flax] [poplar] FTCD_N Formiminotransferase domain, N-terminal subdomain
Representative CDS sequence Show only first row Show all	>Lus10039790 pacid=23165283 polypeptide=Lus10039790 locus=Lus10039790.g ID=Lus10039790.BGIv1.0 annot-version=v1.0 ATGGTGAAGAGTAGTACAAAATCCCTGCTATGCTGCAAGCTCTTCATCTCCGAGTCCCGCAACTCCTCGATCCTGGACGCCATCGAGATAGCCGCCAGGC GGGACCCGGAGACAATGGTGGTGAGCAAATTCCCCGACCGAGTTTACAACAGAATCCGGTACACCCTTGTTTCCTACGTCATGCCCCTGGACAGCACAGG ATCAGAAATCTACAGCCCTCTCCGGCAGACGGTGCTGGCAATGGCGGAGGCAGCTTACGGAGCAATAAGGCTCGACCAGCATTCCGGTACTCATCCTCGA CTCGGCGTTGTGGACGACGTCGTATTCCATCCTTTGGGTCGAGCGTCGCTCGATGAAGCGGCTTGCCTCTCCAAGTCTCTGGCTGCTGATTTCGCTGCCC TGTTCCAAGTGCCGGTGTTTCTATTTGGGGCCGCACACCCAACGGGGAAGGCCTTAGATACCATAAGGAGGGAACTGGGCTACTACAGGCCCAACTTCAC AGGCAACCAATGGGCCGGCTGGACACTGCCCGAAACCTTATCCCTCATTCCCGACGAGGGCCCAACCCAAGTTTCGCCGACGAGGGGGATCGCAATGATC GGAGCAAGGCAGTGGGTTGGGCTATACAACATTCCGATCATGAGCACAGATGCTGCCGCCGCCCGGAGAATTGCCCGGATGGTCAGTGCTCGCGGTGGCG GGCTGCCGACGGTGCAAACACTGGGCCTGGTCCACGGCGAGGACTCGACCGAGATAGCATGTATGTTGTTGGAGCCCAATCAGATCGGTGCGGACCAGGT CCAGAACCGGGTCGAAACTTTAGCTGCCCAACATGGGTTGGACGTTGAGAAGGGCTACTTCACTGATTTCTCACCCGAAATGGTTGTTGAGAGGTACACA AAGTTGATCTCTGGGAACCATAGGGAATGA
AA sequence Show only first row Show all	>Lus10039790 pacid=23165283 polypeptide=Lus10039790 locus=Lus10039790.g ID=Lus10039790.BGIv1.0 annot-version=v1.0 MVKSSTKSLLCCKLFISESRNSSILDAIEIAARRDPETMVVSKFPDRVYNRIRYTLVSYVMPLDSTGSEIYSPLRQTVLAMAEAAYGAIRLDQHSGTHPR LGVVDDVVFHPLGRASLDEAACLSKSLAADFAALFQVPVFLFGAAHPTGKALDTIRRELGYYRPNFTGNQWAGWTLPETLSLIPDEGPTQVSPTRGIAMI GARQWVGLYNIPIMSTDAAAARRIARMVSARGGGLPTVQTLGLVHGEDSTEIACMLLEPNQIGADQVQNRVETLAAQHGLDVEKGYFTDFSPEMVVERYT KLISGNHRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20830			transferases;folic acid bindin...		Lus10039790 [exp]	0	1
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	3.6	0.9548
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10019639 [exp]	5.0	0.9489
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	9.6	0.9501
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	11.9	0.9500
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	12.8	0.9495
AT2G20690			lumazine-binding family protei...		Lus10039826 [exp]	16.4	0.9366
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10027423 [exp]	20.3	0.9283
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	20.9	0.9471
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10009334 [exp]	21.2	0.9340
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	22.1	0.9467

Compare expression of checked genes

Lus10039790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.