Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28190 360 / 3e-127 ULT ULT1 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) AT2G20825 333 / 1e-116 ULT ULT2 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018560 [exp] 393 / 2e-139 AT4G28190 273 / 2e-92 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Lus10038586 [exp] 216 / 8e-70 AT2G20825 205 / 5e-66 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G104500 [exp] 412 / 7e-148 AT4G28190 358 / 6e-127 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Potri.013G145400 [exp] 411 / 2e-147 AT4G28190 380 / 2e-135 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039791 pacid=23165224 polypeptide=Lus10039791 locus=Lus10039791.g ID=Lus10039791.BGIv1.0 annot-version=v1.0 ATGGCGAACGGTTTAGTGGTTGTTGAAGAGGAGAGGAATAGTGACAGTGAGACGGCTGCGGTGGCGGCGATGGCGATGGTGTTGTTTAGCGAGGAGGAGC TGAAGGAGATGAGCGGGGTGAAGAGCGGTGGAGATTACATAGAAGTGACGTGTGGGTGTACTAGCCATAGATATGGCGATGCTGTTGGTAGGCTTAGGGT TTTCGTCAATGGTCACCTTGAAATCACCTGTGAATGCACCCCTGGTTGCGATGAAGGTAAGATGACTCCTGCTGCATTTGAGAAGCATTCCGGAAGAGAG ACAGCTAGGAAATGGAAGAACAATGTCTGGGTCATTGTTAACGGCGTGAAGGTTCCATTGTCAAAGACAGTATTACTCAAGTACTACAACCAGTCGTTGA AAGGCACCAATGGCGCGCAGCGCCCTCAGAGTGGACGGGTTTTCCATCGTGACGAGTTTGTTCGCTGCAGCAAGTGTAACAAGGACCGTAGGTTCCGTTT GCGTACCAAAGAGGAGTGTCGAGTTCACCATGATTCTGTGGCCAATGCAAACTGGAAATGTGCTGACATGCCATTTGACAAACTAACGTGCGATGACGAT GAGGAGAGGGCGAGTCGCAAGGTGTATCGAGGGTGCTCCCGTTCGCCAACTTGTAAAGGATGCACTTCTTGCGTGTGCTTTGGGTGCGAAATCTGCCGAT TCTCGGATTGCAGCTGCCAGACTTGCATCGACTTCACAAGGAATAACAATGCTGCCAATGCATGA
AA sequence Show only first row Show all	>Lus10039791 pacid=23165224 polypeptide=Lus10039791 locus=Lus10039791.g ID=Lus10039791.BGIv1.0 annot-version=v1.0 MANGLVVVEEERNSDSETAAVAAMAMVLFSEEELKEMSGVKSGGDYIEVTCGCTSHRYGDAVGRLRVFVNGHLEITCECTPGCDEGKMTPAAFEKHSGRE TARKWKNNVWVIVNGVKVPLSKTVLLKYYNQSLKGTNGAQRPQSGRVFHRDEFVRCSKCNKDRRFRLRTKEECRVHHDSVANANWKCADMPFDKLTCDDD EERASRKVYRGCSRSPTCKGCTSCVCFGCEICRFSDCSCQTCIDFTRNNNAANA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10039791 [exp]	0	1
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	12.8	0.9114
AT2G39910			ARM repeat superfamily protein...		Lus10040233 [exp]	14.8	0.8005
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	14.9	0.9018
AT4G10270			Wound-responsive family protei...		Lus10018530 [exp]	15.4	0.9072
AT4G10265			Wound-responsive family protei...		Lus10039755 [exp]	17.4	0.9017
AT5G39890			Protein of unknown function (D...		Lus10015360 [exp]	22.6	0.9014
AT2G41945			unknown protein		Lus10021080 [exp]	22.8	0.8922
AT1G43580			Sphingomyelin synthetase famil...		Lus10028111 [exp]	23.2	0.8539
AT4G10265			Wound-responsive family protei...		Lus10018533 [exp]	26.2	0.8962
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	26.5	0.8933

Compare expression of checked genes

Lus10039791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.