Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31450 209 / 4e-63 Eukaryotic aspartyl protease family protein (.1) AT1G64830 209 / 4e-63 Eukaryotic aspartyl protease family protein (.1) AT2G35615 206 / 6e-62 Eukaryotic aspartyl protease family protein (.1) AT2G28010 135 / 8e-36 Eukaryotic aspartyl protease family protein (.1) AT2G28030 134 / 2e-35 Eukaryotic aspartyl protease family protein (.1) AT5G33340 134 / 6e-35 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G28040 130 / 5e-34 Eukaryotic aspartyl protease family protein (.1) AT1G01300 127 / 3e-32 Eukaryotic aspartyl protease family protein (.1) AT3G61820 120 / 5e-30 Eukaryotic aspartyl protease family protein (.1) AT2G28220 119 / 4e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029913 [exp] 511 / 0 AT5G33340 291 / 2e-94 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10039839 [exp] 430 / 3e-149 AT5G33340 294 / 2e-95 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003280 [exp] 358 / 5e-121 AT2G35615 314 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10003279 [exp] 352 / 1e-118 AT5G33340 296 / 2e-96 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 290 / 2e-94 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 277 / 3e-89 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 271 / 7e-87 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 270 / 1e-86 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 264 / 2e-84 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 220 / 2e-67 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 203 / 6e-61 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 203 / 7e-61 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 122 / 1e-30 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 122 / 2e-30 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 121 / 2e-30 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 118 / 4e-29 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 112 / 8e-27 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 110 / 3e-26 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 109 / 3e-26 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10039792 pacid=23164981 polypeptide=Lus10039792 locus=Lus10039792.g ID=Lus10039792.BGIv1.0 annot-version=v1.0 ATGGTTGTTGCTCCTCTTATTTGCTCATCACTAGCCATAGTAGCAATCTTGTGTTGCTTCATAACCAACTCTGAGGGTGAAGAAATCATTGTCAGTTTAA TCCACCGTGACTCTCCTATTTCCCCACTATACAACCCACATGAGACCCCATCTCAGCGAATCGAAAAGGCTCTCAACAGATCCATCAATTGTGCCAGCTA TCTCTCTTCAGCTAACAATAACAACCTTTCTGTCTATTCCAAATTGATCCCAGACGAAATCAGTGGTGAGTACCTGATGAAGTTCTCCATCGGCACTCCC CCATTCCAAGTCTTATTGGTCATGGATACGGGGAGCGACATCATATGGACAAAGTGCAGTGCTTATCCTAATAAAGGTATCCTCTTCACCCCGACATTAT CAAGTACCTACAAAACAATGTCGTGTCCATCAAAAGAGTGCGACTATCTTCAATCTGAAGGAAGCTTCTGCAACCCTAACAACGACAATGTTTGCCATTA CAAACGTATATACGTTGACCAATCCCGCACACTTGGCGACTTTGCTTTCGAGACGTTGACTCTGGAATCGACGTCCGCTCCACACGTCGTTTTTGTAGAA AATACTCTCATCGGGTGTAGCTACGACACACAATTATCGAGGCCATCAAATGGCTCCGGCATCATTGGGCTTGGACGTGGGCCAGGTGACGGTGTCGTTT CAACTCCCATGATCGATCACCCGTCATATTTCCTCCTTAGGTTGGAAGCAATGACCTTGGGGAACGTTCGAATACCGTTTTGGGGATCCAAAGATCAAAA CATCATCATCGACTCTGGTTCGGTAGTTACGATGCTCCCCTGCGGGTTCTTCTCCCAATTGTTGTCTGAGGTGGTAAGACAGACGGTTGGGGCGAAAAGA GTGGAGAGACCATTATTCAGCCTCTGCTTCGAGCTGGATCCCACAGCTGATTTCATTAATGCTCCTCCAATCACGATGAATTTCTTTGGTGCCGATGTGA AGCTACCTTTATCCAACATTTTCACTAACATCAACGATCTCACTACAAAGAATATTGTGACTTGTTTCAATTTTCACCCGAGTAAGTTCGATGATTTAGC GATTTACGGTAATGTACCACAAAGTAACTTTCTCGTTGGGTATGATCTTCAAAATAAAATGGTATCTTTTAAGCCATTCGATTGTATCCCTAAATAA
AA sequence Show only first row Show all	>Lus10039792 pacid=23164981 polypeptide=Lus10039792 locus=Lus10039792.g ID=Lus10039792.BGIv1.0 annot-version=v1.0 MVVAPLICSSLAIVAILCCFITNSEGEEIIVSLIHRDSPISPLYNPHETPSQRIEKALNRSINCASYLSSANNNNLSVYSKLIPDEISGEYLMKFSIGTP PFQVLLVMDTGSDIIWTKCSAYPNKGILFTPTLSSTYKTMSCPSKECDYLQSEGSFCNPNNDNVCHYKRIYVDQSRTLGDFAFETLTLESTSAPHVVFVE NTLIGCSYDTQLSRPSNGSGIIGLGRGPGDGVVSTPMIDHPSYFLLRLEAMTLGNVRIPFWGSKDQNIIIDSGSVVTMLPCGFFSQLLSEVVRQTVGAKR VERPLFSLCFELDPTADFINAPPITMNFFGADVKLPLSNIFTNINDLTTKNIVTCFNFHPSKFDDLAIYGNVPQSNFLVGYDLQNKMVSFKPFDCIPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039792 [exp]	0	1

Compare expression of checked genes

Lus10039792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.