Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03390 441 / 3e-144 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 416 / 2e-134 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G22130 335 / 5e-106 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G11130 317 / 6e-97 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT1G53730 276 / 3e-82 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 272 / 9e-81 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 254 / 4e-74 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 231 / 1e-65 SRF4 STRUBBELIG-receptor family 4 (.1) AT3G58690 206 / 2e-59 Protein kinase superfamily protein (.1) AT5G06820 214 / 3e-59 SRF2 STRUBBELIG-receptor family 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018563 [exp] 593 / 0 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 564 / 0 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 530 / 1e-178 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018459 [exp] 340 / 1e-106 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10011223 [exp] 339 / 4e-106 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10015549 [exp] 324 / 3e-98 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 302 / 1e-91 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10037464 [exp] 288 / 7e-87 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10003926 [exp] 288 / 2e-86 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103900 [exp] 502 / 1e-167 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 482 / 5e-160 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 362 / 4e-114 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 359 / 5e-113 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G010500 [exp] 325 / 3e-100 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 323 / 1e-99 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.003G073700 [exp] 297 / 7e-90 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.001G161600 [exp] 296 / 2e-89 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.014G001200 [exp] 267 / 6e-79 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.007G002600 [exp] 263 / 2e-77 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10039795 pacid=23165146 polypeptide=Lus10039795 locus=Lus10039795.g ID=Lus10039795.BGIv1.0 annot-version=v1.0 ATGGGAGTGAAGAGATTTGGTGGGCAGTTGCTTCTGGTTTTTGCTTTGTTCTGGGGAGTTGAGTTTTCACTTGGAGCTACCAATCCAAATGATGTTACGG CAATTAATAGCTTATACACTTCACTGGGGAGTCCAGTGTTGCCTGGATGGGTTGCCAGCGGAGGCGACCCTTGTGGGGAAGCGTGGCAAGGTGTTCAGTG TGAGAATTCAGTGATTTTGTCCATAGTTCTCAATGGAGCTAACTTGGGTGGAGAACTAGGCAATAATTTGGGAACATTCTCATCAATCAGATCCCTAGAT CTAAGCAGTAACCACATTGGTGGGAGTATTCCATCTAGTCTGCCGGCTACGTTGCGAACATTTTTCCTTGCAGCTAATAATTTCACTGGTAGCATTCCAG ATTCTCTATCCTCTCTATCTCTCTTGACAGCTTTATCACTGAACAACAACCTTCTGAGTGGAGAGATACCCGACTCCTTCCAGTCCCTTGCCGGATTGAT CAATCTAGACTTATCCAGCAACAATTTTAGTGGAAATCTACCTCCTTCTTTTAGTAACTTGAATCAGCTAACAACATTGCGTTTGCAGGATAACCGGTTA TCCGGCACCCTTGATGTTCTGCAAGACCTTCCACTGCAAGATTTGAACATCGAAAATAATCTGTTCTCGGGACCGATACCTCAGAAGATGCTGAGTATTC CGACATTCAATAAAGATGGAAACCCCTTCAACTCTACTGTTTCCCCATTTCCAGCACCCCCGTCTCCGGTAACACTTCCAACTTCACCACCGCCTTCCAG GAGAACCCCGGGGAAACAAACAGAGGCACCATCTTCTTCTCCTTCAAGTGGAAAGAATTCTACTAAAACGAAAAAAATAGTTGGGATATCAATTGGAGGG GCAGTGGTTTCTGTAGTTTTCTTGTTGGCATTGTTGCTTTGCATTCCGAAATGTCGTAAAAGGAGAGAAGAAAGCACCGGCAGTGGATTTTTCAAGCGGC ATCAAGTTGGTGCCTCCCAAGGCAACAACAGAGAGCATCCAAGAGACAATAATAGTAACTTGTTATTGCCAACTAGTCAACCACCAATTGAAAAAGATCC AAAGGAGGTTATGTCACAGGCAAAGAAAGATAATCCGGTCCTACAAAAATCACCTGAAAGAGACCTTCCTAAGCAGAATGATCATGGAATTGATTTGAGC CGTCTAGAGTCAACCGATATGAACTATATGCCTCCCACCGCACCGCCTCCTCCTCCTCCACCACCCCCTCCTCACATTCAGAAGGTCGTTGTTAAGCCAC TTGTGCCTGCAAAGCCTAGAAATGTCGTGACGTCAGTTAAAACTTTCACTGTGGCGTCTCTTCAGCAATACACTAATAGCTTCTCTCCAGAGAATCTCAT AGGAGGTGGTATGCTAGGAACTGTTTATAGAGCAGAGCTTCCTGATGGAAAGCTGCTGGCAGTGAAAAAGCTGGACAAGAAAGCAGCAAGCCTGCAGGAT GATGAGTTTCTTGAACTGGTCAATAACATTGACCGGATCCGACACGCTAACATCGTTGAGCTCATGGGATACTGTGCTGAGCATGATCAGAGACTTCTGA TCTATGAATATTGCAGTAATGGCACCCTGCAGGATTTGCTTCACTCGGACGATGAATTGAAGGACAATCTCACCTGGACCTCCCGCATTAGGTTGGCCCT TGGAGCCGCCAGAGCTTTAACATATTTGCATGAGGTCTGCCAGCCACCAGTTGTTCACAGAAATTTCAAGTCTGGCAATATTCTCCTCGATGATGATCTC GATGTCCGTGTCTCGGATTGCGGTTTGGCTACATTGATATCATCCGGTTCTGTAAGTCAGTTGTCGGGGCAACTGCTAACAGCATATGGCTATGGAGCAC CGGAATTCGAGTCAGGAATTTACACCGTCCAGAGCGATGTCTACAGCTTCGGGGTTGTAATGTTGGAACTTTTGACAGGCCGAAAATCCTATGACCGGTC AAGAAATCGTGGCGAGCAGTTCCTAGTGAGGTGGGCAATCCCTCAGCTCCATGACATCGATGCATTATCTCGGATGGTTGACCCTTCTCTCGATGGTCAA TACCCTGCGAAGTCACTTTCCAACTTCGCTGACATCATCTCGCGATGTGTTCAGTCCGAGCCAGAATTCCGACCACAGATGTCTGAGGTTGTTCAGGATA TAACCAACATGATCAGAAGGGAACGCCCCAGCAGCGAATCCATCGGAGACTGA
AA sequence Show only first row Show all	>Lus10039795 pacid=23165146 polypeptide=Lus10039795 locus=Lus10039795.g ID=Lus10039795.BGIv1.0 annot-version=v1.0 MGVKRFGGQLLLVFALFWGVEFSLGATNPNDVTAINSLYTSLGSPVLPGWVASGGDPCGEAWQGVQCENSVILSIVLNGANLGGELGNNLGTFSSIRSLD LSSNHIGGSIPSSLPATLRTFFLAANNFTGSIPDSLSSLSLLTALSLNNNLLSGEIPDSFQSLAGLINLDLSSNNFSGNLPPSFSNLNQLTTLRLQDNRL SGTLDVLQDLPLQDLNIENNLFSGPIPQKMLSIPTFNKDGNPFNSTVSPFPAPPSPVTLPTSPPPSRRTPGKQTEAPSSSPSSGKNSTKTKKIVGISIGG AVVSVVFLLALLLCIPKCRKRREESTGSGFFKRHQVGASQGNNREHPRDNNSNLLLPTSQPPIEKDPKEVMSQAKKDNPVLQKSPERDLPKQNDHGIDLS RLESTDMNYMPPTAPPPPPPPPPPHIQKVVVKPLVPAKPRNVVTSVKTFTVASLQQYTNSFSPENLIGGGMLGTVYRAELPDGKLLAVKKLDKKAASLQD DEFLELVNNIDRIRHANIVELMGYCAEHDQRLLIYEYCSNGTLQDLLHSDDELKDNLTWTSRIRLALGAARALTYLHEVCQPPVVHRNFKSGNILLDDDL DVRVSDCGLATLISSGSVSQLSGQLLTAYGYGAPEFESGIYTVQSDVYSFGVVMLELLTGRKSYDRSRNRGEQFLVRWAIPQLHDIDALSRMVDPSLDGQ YPAKSLSNFADIISRCVQSEPEFRPQMSEVVQDITNMIRRERPSSESIGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	0	1
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10025092 [exp]	3.6	0.8845
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	4.0	0.8584
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	4.5	0.8458
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	5.2	0.8367
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	5.5	0.8407
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	6.5	0.8019
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	6.9	0.8107
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	10.2	0.8370
AT3G07565			Protein of unknown function (D...		Lus10025582 [exp]	11.3	0.7579
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	11.7	0.7892

Compare expression of checked genes

Lus10039795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.