Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11120 117 / 3e-34 unknown protein AT4G28170 69 / 1e-15 unknown protein AT1G09812 66 / 1e-14 unknown protein AT1G58007 54 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018564 [exp] 158 / 5e-51 AT1G11120 74 / 1e-17 unknown protein Lus10018462 [exp] 111 / 5e-32 AT1G11120 122 / 3e-36 unknown protein Lus10011221 [exp] 108 / 6e-31 AT1G11120 121 / 8e-36 unknown protein Lus10037361 [exp] 58 / 5e-11 AT1G09812 97 / 2e-26 unknown protein Lus10035787 [exp] 57 / 1e-10 AT1G09812 96 / 8e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103800 [exp] 147 / 3e-46 AT1G11120 119 / 5e-35 unknown protein Potri.004G037200 [exp] 144 / 4e-45 AT1G11120 147 / 9e-46 unknown protein Potri.011G045900 [exp] 135 / 2e-41 AT1G11120 133 / 2e-40 unknown protein Potri.004G224200 [exp] 77 / 9e-19 AT1G09812 118 / 4e-35 unknown protein Potri.003G006900 [exp] 74 / 2e-17 AT1G09812 105 / 6e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039796 pacid=23164982 polypeptide=Lus10039796 locus=Lus10039796.g ID=Lus10039796.BGIv1.0 annot-version=v1.0 ATGGGGGTCGACGACAGCTGGATAACAGTCCCACCGGAGACGGCGGCGATGAGCTCGGACAGGGCGGAAGACCACTGGAGGCATTTCGACAACTCGGTCG ACGCGGTGTCGTTTGGGTTCGTGGCTACTGCGATTCTCATTTCAATGTTCTTGGTCATGGCTATCTTCGAACGGTTTCTCCGGCCGAGATCGTCTCCCAA TCCTTCTACTTCTTCTTCGTCTTCACGTCCGGTTGATCTCGAGGCGCAGTTTGGATTCAACGGCAAGCTTACTAATTACCCATCTCCAAAGATGACGGTT TATGCAAAAGGTGTATCAGTATTGATGCCAGGGGAGCATTGCCCGACCTACCTAGCGCATCCGGCTCTGGCGCCATGTCCACCAGACCGTGATCTCCGGC CATTCCGCGCCACGTCGACTCCGACCAGCTAG
AA sequence Show only first row Show all	>Lus10039796 pacid=23164982 polypeptide=Lus10039796 locus=Lus10039796.g ID=Lus10039796.BGIv1.0 annot-version=v1.0 MGVDDSWITVPPETAAMSSDRAEDHWRHFDNSVDAVSFGFVATAILISMFLVMAIFERFLRPRSSPNPSTSSSSSRPVDLEAQFGFNGKLTNYPSPKMTV YAKGVSVLMPGEHCPTYLAHPALAPCPPDRDLRPFRATSTPTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11120			unknown protein		Lus10039796 [exp]	0	1
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	4.4	0.9665
AT3G48970			Heavy metal transport/detoxifi...		Lus10039225 [exp]	5.9	0.9295
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	8.7	0.9542
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	12.6	0.9308
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	13.2	0.9595
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10030378 [exp]	14.7	0.9274
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	15.6	0.9607
AT4G27660			unknown protein		Lus10032928 [exp]	17.7	0.9470
AT5G67460			O-Glycosyl hydrolases family 1...		Lus10002466 [exp]	19.0	0.9537
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	20.8	0.9393

Compare expression of checked genes

Lus10039796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.