Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03400 769 / 0 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) AT2G46370 531 / 0 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) AT1G28130 362 / 6e-117 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT4G37390 358 / 6e-116 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT1G23160 352 / 1e-113 Auxin-responsive GH3 family protein (.1) AT1G48660 352 / 1e-113 Auxin-responsive GH3 family protein (.1) AT2G23170 351 / 5e-113 GH3.3 Auxin-responsive GH3 family protein (.1) AT5G54510 348 / 1e-111 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 345 / 1e-110 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT1G59500 343 / 4e-110 GH3.4 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018565 [exp] 766 / 0 AT4G03400 495 / 1e-169 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 572 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 570 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003598 [exp] 355 / 2e-114 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 352 / 5e-113 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 348 / 2e-111 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 340 / 1e-108 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 338 / 6e-108 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 338 / 8e-108 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103500 [exp] 841 / 0 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.013G144300 [exp] 832 / 0 AT4G03400 852 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.014G095500 [exp] 564 / 0 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.002G168200 [exp] 557 / 0 AT2G46370 788 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.009G092900 [exp] 357 / 3e-115 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G069000 [exp] 355 / 2e-114 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.001G298300 [exp] 347 / 1e-111 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 342 / 2e-109 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 340 / 1e-108 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.002G206400 [exp] 339 / 1e-108 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10039797 pacid=23165085 polypeptide=Lus10039797 locus=Lus10039797.g ID=Lus10039797.BGIv1.0 annot-version=v1.0 ATGGAGGAGCATTCTCCTGCAATTACCAACGGCCATCATGCCGGCATTGTTGGTTGGTTCGAGGACGCGGCCGAGAATGCCGGCAGCGTCCAGGCAGAAA CCCTCCGGCGGATTCTCCAGCTCAACTGGGGCGTTGAGTATCTCCGGAGATGGTTCGGAGAAGAAACAGAGTACTCCTCTGGCGATATCCTTGATGAAAT GGACGCCTCCAAGATTGAATCTTTCTTCACCAAATCGGTCCCTCTCGCTAACCACGTCGATTTGGAGCCGTACATCCAGCGTATCGCCGACGGCGACTCT CGCCTCCTCACCCGCCACCGCATCCCCACTCTGTCCCTGAGTTCGGGGACCACAGAAGGGAGGCAGAAGTACGTGCCGTTTACGCGCCACAGCGCGGAAA CGACTTTACAGATGTTCACCCTGGCGGCGGCGTACAGGTCGATGAAGTTTCCGGTGAGGGAAGGCGGCAGGGTGTTGGAATTTATCTACAGCGGGAAACA GTTCAAGACGAAAGGAGGCCTCACCGTCGGAACCGCCACCACGCACTACTACTCCAGCGAGCAGTTCAAGCTGAAGCAAGAGCAAACCAAACTATTCACC TGCAGTCCGCCGGAAGTAATCTCCGGCGGCGATGACTACATCCAAATCACTTACTGCCACCTCCTTTTGGGTCTTTTATACTCCGACGAGGTCGAATTCG TAACTTCCACTTTTGCATACAGTATAGTCCAGGCCTTCGCGGCTTTTGAGGAGTTCTGGCCGGAGATCTGCCACGACATCCGTTATGGACAGCTCAGCGC GAGAATTAAGGGCGGGAAGATGAGGCAGGCGGTTATGGATTTACTCACCCGCCCCGACCCGGACCTGGCGGATTGGGTCGAGAGGCGGTGCGAGGATCTG GAGCGGAGGAGGTGGGTAGGGTTGGTGGCGGAGCTTTGGCCCAATGCGAAGTATGTTTACTCGATAATGACCGGGGCAATGCAGCCGTACTTGAGGAAAC TAAGGGACTATGTCGGACCATTGTTACCGTTGATCAGCGCTGACTACGGGTCGACCGAGAGCTGGATCGGGGTGAATGTGGATCCCGATTTACCGCCCGA GGAGGTCACGTTTGCCGTGGTGCCAAGTTTCTCGTATTTCGAGTTCATCCCGCTATATAGAGAGACGAAGTTAGTCAAATTACAGTCGGGGGAGGAAGGG CATAACGGTAATTGTGCGGGAGTCACGGTGGGTAATGACGACTTTGTGGAGGGAGAAGCGGTCCCGTTGGCGAGAGTTGAAGTGGGTCAGCAGTATGAAA TTGTGCTCACGACTTTTACGGATGAACGGTCTTGGTCATTAGGGTTGTACAGATATAGGCTAGGCGATGTAGTAGAGGTGTCGGGCTTCCACAAGTCGAC ACCAAAGCTCAACTTCATCTGCAGAAGGAAGCTAATCCTGACCATAAACATCGACAAAAATACTGAAAGAGACCTCCAAATCGTGGTAGAAAAGGGCGCC ACCCTCCTCAACAAGAGAACAGCCGGAAAGGCAGAGATCGTCGACTTCACCAGCAGTGTAGCTGACGTTGACCACCACCCTGGACACTACGTCATCTACT GGGAGATCAAAGGCGGCATGGCAGAGGATGACGTGTTGCGTGAATGTTGCACGGTGATGGACGAGTCATTCGTGGACCATGGCTACGTGGTGTCGAGGAG GACGAACTCGATTGGGCCGTTGGAGCTTAGGGTGGTGGAGAGGGGAACGTTTAGGGAGATATTGGATTACTTCATTGGGAATGGAGCAGCCTTGAGCCAG TTCAAGACTCCTAGGTGTACTAGTAACGAGGTTTTGTTGAGGATTCTTGATGATTCCACTATTAGGAGATTCTTTAGTACGGCTTATCATAGTTGA
AA sequence Show only first row Show all	>Lus10039797 pacid=23165085 polypeptide=Lus10039797 locus=Lus10039797.g ID=Lus10039797.BGIv1.0 annot-version=v1.0 MEEHSPAITNGHHAGIVGWFEDAAENAGSVQAETLRRILQLNWGVEYLRRWFGEETEYSSGDILDEMDASKIESFFTKSVPLANHVDLEPYIQRIADGDS RLLTRHRIPTLSLSSGTTEGRQKYVPFTRHSAETTLQMFTLAAAYRSMKFPVREGGRVLEFIYSGKQFKTKGGLTVGTATTHYYSSEQFKLKQEQTKLFT CSPPEVISGGDDYIQITYCHLLLGLLYSDEVEFVTSTFAYSIVQAFAAFEEFWPEICHDIRYGQLSARIKGGKMRQAVMDLLTRPDPDLADWVERRCEDL ERRRWVGLVAELWPNAKYVYSIMTGAMQPYLRKLRDYVGPLLPLISADYGSTESWIGVNVDPDLPPEEVTFAVVPSFSYFEFIPLYRETKLVKLQSGEEG HNGNCAGVTVGNDDFVEGEAVPLARVEVGQQYEIVLTTFTDERSWSLGLYRYRLGDVVEVSGFHKSTPKLNFICRRKLILTINIDKNTERDLQIVVEKGA TLLNKRTAGKAEIVDFTSSVADVDHHPGHYVIYWEIKGGMAEDDVLRECCTVMDESFVDHGYVVSRRTNSIGPLELRVVERGTFREILDYFIGNGAALSQ FKTPRCTSNEVLLRILDDSTIRRFFSTAYHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10039797 [exp]	0	1
AT5G06270			unknown protein		Lus10004209 [exp]	1.7	0.9213
					Lus10035524 [exp]	2.6	0.8775
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	4.0	0.9077
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	4.2	0.9027
					Lus10019515 [exp]	7.5	0.8764
AT3G18050			unknown protein		Lus10027253 [exp]	9.9	0.8348
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	11.2	0.8895
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	12.6	0.8898
					Lus10035486 [exp]	13.5	0.8579
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	16.4	0.8691

Compare expression of checked genes

Lus10039797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.