Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03560 472 / 8e-164 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G31850 205 / 4e-59 PGR3 proton gradient regulation 3 (.1) AT1G09900 198 / 2e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 191 / 1e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G01740 189 / 3e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 186 / 4e-53 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 186 / 4e-53 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 181 / 8e-52 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 178 / 1e-51 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12700 180 / 6e-51 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018567 [exp] 672 / 0 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003424 [exp] 192 / 2e-54 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 187 / 8e-53 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025533 [exp] 184 / 4e-52 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 185 / 5e-52 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021074 [exp] 176 / 1e-51 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 182 / 2e-51 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10026558 [exp] 182 / 3e-51 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 178 / 7e-51 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103400 [exp] 548 / 0 AT1G03560 911 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G109500 [exp] 196 / 1e-57 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 196 / 7e-57 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019300 [exp] 192 / 4e-56 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050300 [exp] 192 / 4e-56 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 191 / 9e-56 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G047000 [exp] 191 / 1e-55 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G111600 [exp] 191 / 3e-55 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 191 / 5e-55 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 189 / 5e-55 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039799 pacid=23165211 polypeptide=Lus10039799 locus=Lus10039799.g ID=Lus10039799.BGIv1.0 annot-version=v1.0 ATGAAGGAAAACGGAGTTGAACCGAGTCTGTTCACGTATAATTTCCTGGTTAGCGGTTTGGTTAAGGCCGGATATATTCGTTCCGCTGAGCTTGTCTTCA AATTTATGGAGAATGGCAGGATTCAACCTGATGTTGTTACTTACAACACGTTGATCAAAGGCTATTGCCAAGTCGAGAAAACGAAGAACGTCTTCGAAAG GTTGCGAGAGATGGACTTGCTCGCGGACAAGATTACTTACACAACTTTGATCCAAGCGTGTTATTCGGAGGGCGATGTCGATCAATGTCTGTCTTTGTAT CACGAAATGACCGAAAAGGGGTTGGAAATCCCGCCTCATTCGTATAGCTTGGTGATCGGAGGGCTTTGTAAAGAAGGGAGATGTGTCAAAGGGTATGCTG TTTTTGAGAATATGATTCAGAATGGATGTAAGCCGAATGTTGCAATATACACGGCTTTGATGGACTCCAATGCGAAATGTGGAAACACGGGGGAGGCGAT GCTACTGTTTGAAAGGATGACAAGGGAAGGGCTTGAGCCAGATGACGTTACTTATGGGGTTATTATTAACTGTTTGTGTAAGAATGGGAAGTTGGAAGAG GCAATTGATTGTTTGAGTTTGTGTAAAGAAAATGGAGTCGCAGTCAATGCTGTAATGTATTGCAGTTTGATTGATGGTTTGGGAAAGGCCGGGAGAGTCG ACGAAGCTGAAAGGCTATTTACCGAGATGAACGGACAAGGTTGTTTACCTGATTCCTATTGCTATAATGCTCTGATTGATTCGCTTGCCAAATGTGGCAA GATCGATGAGGCGTTGGGCCTCTTTAGGAGAATGGAGGTTGAAGGATGTGGCCAGACCGTTTACACGTATACCATACTCATGAGCGGGTTATTTCGAGAA CACAGAAACGAAGAGGCGTTGAAGGGTTGGGATGCGATGATTGATAAGGGAATCACACCGACAGCGGCTGCTTTCAGAGTCCTGTCAATCGGCTTATGTC TATGTGGCAAGATAGCAAGAGCTTGA
AA sequence Show only first row Show all	>Lus10039799 pacid=23165211 polypeptide=Lus10039799 locus=Lus10039799.g ID=Lus10039799.BGIv1.0 annot-version=v1.0 MKENGVEPSLFTYNFLVSGLVKAGYIRSAELVFKFMENGRIQPDVVTYNTLIKGYCQVEKTKNVFERLREMDLLADKITYTTLIQACYSEGDVDQCLSLY HEMTEKGLEIPPHSYSLVIGGLCKEGRCVKGYAVFENMIQNGCKPNVAIYTALMDSNAKCGNTGEAMLLFERMTREGLEPDDVTYGVIINCLCKNGKLEE AIDCLSLCKENGVAVNAVMYCSLIDGLGKAGRVDEAERLFTEMNGQGCLPDSYCYNALIDSLAKCGKIDEALGLFRRMEVEGCGQTVYTYTILMSGLFRE HRNEEALKGWDAMIDKGITPTAAAFRVLSIGLCLCGKIARA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03560			Pentatricopeptide repeat (PPR-...		Lus10039799 [exp]	0	1
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	4.0	0.7883
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10015898 [exp]	5.2	0.7575
AT5G08010			unknown protein		Lus10040520 [exp]	8.8	0.8030
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10002745 [exp]	8.8	0.7882
AT1G55170			unknown protein		Lus10034321 [exp]	15.2	0.7673
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	21.5	0.7589
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10040806 [exp]	23.4	0.7774
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	26.2	0.7466
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	26.2	0.7622
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	31.1	0.7503

Compare expression of checked genes

Lus10039799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.