Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03410 426 / 5e-149 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT1G52870 416 / 6e-145 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G14860 76 / 2e-15 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 75 / 5e-15 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 73 / 2e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G19750 59 / 9e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 56 / 3e-09 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT3G24570 54 / 4e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018568 [exp] 617 / 0 AT4G03410 439 / 4e-155 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10043097 [exp] 403 / 1e-138 AT1G52870 505 / 2e-179 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10032655 [exp] 400 / 6e-137 AT1G52870 499 / 3e-176 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10002118 [exp] 74 / 9e-15 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 74 / 1e-14 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10034922 [exp] 67 / 1e-12 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10018700 [exp] 66 / 1e-11 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10023648 [exp] 64 / 2e-11 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10039003 [exp] 59 / 1e-09 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103200 [exp] 455 / 1e-160 AT4G03410 413 / 2e-145 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 425 / 3e-148 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.011G123700 [exp] 419 / 6e-146 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.009G090600 [exp] 74 / 1e-14 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 73 / 2e-14 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.013G144251 [exp] 62 / 2e-12 ND / Potri.018G037100 [exp] 60 / 4e-10 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G081600 [exp] 57 / 4e-09 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.006G032500 [exp] 56 / 2e-08 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.016G029700 [exp] 55 / 2e-08 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10039800 pacid=23165339 polypeptide=Lus10039800 locus=Lus10039800.g ID=Lus10039800.BGIv1.0 annot-version=v1.0 ATGGCGCTCCTTTCTCCCACCGCCGCAGCTCTCCCCAATCGCCTCCCCCTTTCTTCAAAACCCACCAAACAATCACTCGCCTGCCGCGCATCCTTGAACC CGATTCGCTGTATGAGAAAAAGGAAACACCGCATCGTCGCGTCGCTTACAGAGGAGAAGGAAGAAGTACTTCCCGTCAAAAAGGACAGTGACCCTCTGGA TCTAGGCCCTCTTTCTTCCTCTCTATCTTCTCTAGCTGAAGAGTTCAAGGAAGATGACGATAAGGAGAGAATTATAAGCAGAGGGATTAACGCCGCCATC GTTTTGGGTTTCGGGACTCTTGCTGTGTCGAGATTGCTCACGATCGACCATGATTACTGGCATGGATGGACGCTGTATGAGATACTAAGGTATGCACCTG AGCACAATTGGGTTGCATATGAACAAGCTTTGAAATCGAATCCTGTATTGGCTAAGATGGCAATTAGTGGGATTGTATACTCTATAGGAGACTGGATTGC TCAATGCTGCGAAGGGAAGCCGCTATTCGAATTTGATCGAACTCGAATGTTCAGATCGGGGCTTGTTGGCTTTACACTTCATGGTTCCCTTTCTCATTAC TACTACCAGTTCTGTGAGGCTCTTATCCCTTATCAGGATTGGTGGGTGGTACCTGCAAAAGTTGCATTTGATCAAACGGTTTGGGCAGCAATTTGGAACA GCATCTATTTTGTGGCGCTTGGTTTCTTGCGATTCGAGTCCCCCGGGAGAATCTTTAGTGAGCTCAAGGCAACATTCCGGCCTATGCTGACTGCAGGATG GAAGCTATGGCCATTTGCCCATTTGATCACATATGGGGTCATCCCTCTGGAGCAAAGGCTTCTCTGGGTGGACTGCGTCGAGCTCATTTGGGTCACCATT CTCTCAACCTACTCGAACGAAAAGTCAGAAGCCCGAATTGTGGACTCAACTTGGGAGGCAGATTCGAGCTCTTCAGGCAACTCTTCTGAGTCTATAAGAT CAGCTCCGGCCACAATGGCGAAGCTCGAACCCATCGACAACGAGCCGCGAACAGAAGCCTACGACAACAACAAGAAGAATGATAAGAAGCAGAAAAGGAA TCGCGGTTCGTCCAAATTCTTCGTCTTGGTCGATTACTTGTTCCTCTGCATCTTCCTCGCCTTCCTCTCCTTCATCATCTTCAAGATTGTCGGCGCCTGG TGA
AA sequence Show only first row Show all	>Lus10039800 pacid=23165339 polypeptide=Lus10039800 locus=Lus10039800.g ID=Lus10039800.BGIv1.0 annot-version=v1.0 MALLSPTAAALPNRLPLSSKPTKQSLACRASLNPIRCMRKRKHRIVASLTEEKEEVLPVKKDSDPLDLGPLSSSLSSLAEEFKEDDDKERIISRGINAAI VLGFGTLAVSRLLTIDHDYWHGWTLYEILRYAPEHNWVAYEQALKSNPVLAKMAISGIVYSIGDWIAQCCEGKPLFEFDRTRMFRSGLVGFTLHGSLSHY YYQFCEALIPYQDWWVVPAKVAFDQTVWAAIWNSIYFVALGFLRFESPGRIFSELKATFRPMLTAGWKLWPFAHLITYGVIPLEQRLLWVDCVELIWVTI LSTYSNEKSEARIVDSTWEADSSSSGNSSESIRSAPATMAKLEPIDNEPRTEAYDNNKKNDKKQKRNRGSSKFFVLVDYLFLCIFLAFLSFIIFKIVGAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10039800 [exp]	0	1
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10018568 [exp]	1.0	0.9424
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	4.7	0.9272
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10009359 [exp]	6.9	0.9111
AT3G19900			unknown protein		Lus10034203 [exp]	7.7	0.9018
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Lus10008781 [exp]	8.7	0.9203
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	12.7	0.9226
AT2G36895			unknown protein		Lus10023001 [exp]	13.4	0.9045
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	15.3	0.8607
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	16.7	0.9084
AT3G09050			unknown protein		Lus10035515 [exp]	18.8	0.9090

Compare expression of checked genes

Lus10039800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.