Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03415 649 / 0 Protein phosphatase 2C family protein (.1.2) AT1G03590 627 / 0 Protein phosphatase 2C family protein (.1) AT1G16220 432 / 3e-148 Protein phosphatase 2C family protein (.1) AT1G79630 429 / 5e-147 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 411 / 8e-140 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 399 / 9e-136 Protein phosphatase 2C family protein (.1) AT3G05640 303 / 1e-99 Protein phosphatase 2C family protein (.1.2) AT5G27930 303 / 2e-99 Protein phosphatase 2C family protein (.1.2) AT5G01700 303 / 4e-99 Protein phosphatase 2C family protein (.1.2) AT3G16800 256 / 2e-81 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018570 [exp] 939 / 0 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10033708 [exp] 669 / 0 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 668 / 0 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10000402 [exp] 413 / 2e-140 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 412 / 3e-140 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 375 / 4e-127 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 363 / 5e-122 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 382 / 5e-121 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 377 / 3e-118 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G103100 [exp] 751 / 0 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 745 / 0 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 445 / 3e-153 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.001G473300 [exp] 435 / 4e-149 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 420 / 2e-143 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.013G085500 [exp] 415 / 2e-141 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.016G127900 [exp] 352 / 6e-117 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 350 / 2e-116 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 315 / 3e-104 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.010G006200 [exp] 303 / 1e-99 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10039802 pacid=23165100 polypeptide=Lus10039802 locus=Lus10039802.g ID=Lus10039802.BGIv1.0 annot-version=v1.0 ATGGGAGCTTGTTTGTCAACCAGCACTAGGAGTAGTTGTAGCAGTAGGCGCAATGGAGAAAGAAGACGTCCCTCGACTCGCATGGGTTTACGACGGTTTT GTGGACCAAAGAGAACCAAGCGGACATTCTCTGATCATACTATGACACTGCAGCATTTGGGTTCCGTACCGAACAGGATCTTTGCCAATGGGAAGAGCAC AAGTTCGTGTATCTTCACGCAGCAAGGACGCAAGGGTATTAATCAGGATGCAATGCTTGTATGGGAGGACTTCATGACGGAAGATGTGACGTTCTGTGGA GTTTTTGATGGCCATGGACCTCACGGCCATCTTGTCGCCAGGAAGGTTAGGGATACCTTGCCGGTAAAGTTGATGTCTTTCTTGACCTCTCATCAATCAA GGCAAGATGGGTCTGGTCAAACTCAAATATGCTGCAAAGGGAATTCAAAAGGACTAGAATGCAGAGACCTTGAGAAGGATGGTTCAGCAACTGAGGAGGA CAAATTGGATTCCATGTGGAGAGAAGCGTTCACGAAATCTTATAAATCCATGGATAAAGAGCTCAAATCTCATCCCAACTTGGATTGCTTCTGTAGCGGG AGCACTTCGGTGACTATAGTGAAACAGGGATGTAATCTGTTTATGGGATATATCGGGGATTCTCGTGCGATCATGGGTTCCAAGGACAGCAATGATTCCA TGGTGGCTATCCAGTTGACTGTCGATCTGAAGCCTGATTTGCCAAGGGAGGCTGAGCGGATTAAGCGATGTAAAGGTCGAGTCTTTGCTTTACAAGATGA ACCTGAAGTGCCTAGAGTTTGGTTGCCATTTGATGATGCTCCTGGCCTAGCTATGGCCCGAGCATTCGGTGATTTTTGCTTGAAGGAGTATGGAGTCATA TCCGTACCGGAGTTCTCTCACCGGCTTCTCACCGAACGAGATCAATTCATTGTTCTTGCTTCAGATGGGGTGTGGGATGTGTTGAGCAATGAAGAAGTAG TGGAGATAGTAGCCACAGCTCCAACACGGTCATCCGCAGCGAGGCTACTGGTGGAGTCAGCGGCTCGAGAATGGAAGCTTAAGTACCCGACTTCGAAGAT GGATGACTGTGCAGTGGTGTGTTTGTTCCTGGATGGCAAAATGGACTCGGAATCCTCTGATTGCGAAGAACAAGGCTTTTCTTCTTCTGCAATCAACCAT TCTGGCAATGCAGCTGAATCAGATGATGGGCAGGACAAATCAGCTGAGCCATGCCTGCAGAGGAACTTTACCGTGAGATCCTCCGAGGAAAACGAAGCTT ACTCGAGGCTGGCAACCAACGACGAGAAGGTGGCTGGCCCGGAAGATGAAGGGTGGTCAGGGTTGGAAGGTGTGACTCGAGTGAACTCGCTCGTTCAGCT CCCGAGATTTTCGGGTGAAAAACCAAGCACATGA
AA sequence Show only first row Show all	>Lus10039802 pacid=23165100 polypeptide=Lus10039802 locus=Lus10039802.g ID=Lus10039802.BGIv1.0 annot-version=v1.0 MGACLSTSTRSSCSSRRNGERRRPSTRMGLRRFCGPKRTKRTFSDHTMTLQHLGSVPNRIFANGKSTSSCIFTQQGRKGINQDAMLVWEDFMTEDVTFCG VFDGHGPHGHLVARKVRDTLPVKLMSFLTSHQSRQDGSGQTQICCKGNSKGLECRDLEKDGSATEEDKLDSMWREAFTKSYKSMDKELKSHPNLDCFCSG STSVTIVKQGCNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVI SVPEFSHRLLTERDQFIVLASDGVWDVLSNEEVVEIVATAPTRSSAARLLVESAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESSDCEEQGFSSSAINH SGNAAESDDGQDKSAEPCLQRNFTVRSSEENEAYSRLATNDEKVAGPEDEGWSGLEGVTRVNSLVQLPRFSGEKPST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	1.4	0.8957
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	2.0	0.8845
AT2G23700			Protein of unknown function, D...		Lus10011308 [exp]	3.9	0.8602
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	5.5	0.8679
AT3G01750			Ankyrin repeat family protein ...		Lus10041582 [exp]	6.0	0.8082
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10008724 [exp]	7.7	0.7699
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	8.7	0.8625
AT1G71110			unknown protein		Lus10035272 [exp]	9.2	0.8237
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	11.5	0.8545
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	11.7	0.7825

Compare expression of checked genes

Lus10039802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.