Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03420 275 / 4e-92 Protein of unknown function (DUF789) (.1) AT1G03610 274 / 8e-92 Protein of unknown function (DUF789) (.1) AT4G28150 227 / 6e-74 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 214 / 2e-68 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 204 / 3e-64 Protein of unknown function (DUF789) (.1) AT1G15030 134 / 5e-37 Protein of unknown function (DUF789) (.1) AT5G49220 132 / 7e-36 Protein of unknown function (DUF789) (.1) AT4G16100 131 / 2e-35 Protein of unknown function (DUF789) (.1) AT2G01260 130 / 2e-35 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT5G23380 106 / 7e-27 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018572 [exp] 404 / 1e-142 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 352 / 7e-123 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 280 / 1e-93 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10036189 [exp] 190 / 6e-58 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10038327 [exp] 188 / 7e-58 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10037716 [exp] 132 / 1e-35 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 130 / 7e-35 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 124 / 5e-32 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 99 / 6e-24 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G144000 [exp] 316 / 3e-108 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 309 / 3e-105 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 209 / 3e-66 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 202 / 1e-63 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 139 / 2e-38 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 139 / 2e-38 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G000700 [exp] 139 / 3e-38 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 129 / 4e-35 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.004G068700 [exp] 69 / 4e-13 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 69 / 4e-13 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10039803 pacid=23165378 polypeptide=Lus10039803 locus=Lus10039803.g ID=Lus10039803.BGIv1.0 annot-version=v1.0 ATGGTGTTTGACAAAGGGTCAACGAGATCAAACCTAGATTGCTTCCTCAATTTCACTACCCCTGTAGTCGAATCTCATTTCCTGCCAAAGTACTACGTCC CGTACCTCTCCGCGATCCAAATCTTCACCAGCACCGCTGCTGCCGCCGTCGGCGGCAGGTACGAAACAGAGTCCGCCGCTGGGGACAGCGATTCCTTCAG CAGCGGCGACGACAACTGTGGTGACTGTAAATGGGACGGATGCTCGTCGGAGGAATTGGAACAGGACAATCTAACAACGCTATGGCATCTGAACGATCGG TTAGGGTATCTGTATTTCCAGTATTTCGAACGATCGACGCCTTACGGCAGAGTTCCATTGATGGATAAGATCAATGGATTAGCTCGAAAATACCCAGGTT TGATGTCTTTGAGAAGCGTGGACCTCTCGCCAGCTAGCTGGATGTCTGTAGCTTGGTATCCAATTTATCACATACCAATGGGAAGAACCATCAAGGATTT GTCGACATGTTTTCTTACTTACCATACCCTTTCATCATCTTTCCAAGATATGGATATTGAAGACGATTTAGAGCAGAATGTAGGAGGAGGAGGGGGAGGG AGAAAGAAGAGGAAAGAAGGGGAGGGGATATCGTTGGCACCGTTCGGGATGGTGAGTTACAAGATGCAAGGGGATGTTTGGGTGTCGGGGAACCATGGTT GGGACCAAGAGAGGCTGGTGTCGATGGTGAGCGTTGCAGACTCGTGGCTTAAACAGTTGAGGGTCCAACATCACGATTTCAATTACTTCACTGGGCTTCG TCGTGGATGA
AA sequence Show only first row Show all	>Lus10039803 pacid=23165378 polypeptide=Lus10039803 locus=Lus10039803.g ID=Lus10039803.BGIv1.0 annot-version=v1.0 MVFDKGSTRSNLDCFLNFTTPVVESHFLPKYYVPYLSAIQIFTSTAAAAVGGRYETESAAGDSDSFSSGDDNCGDCKWDGCSSEELEQDNLTTLWHLNDR LGYLYFQYFERSTPYGRVPLMDKINGLARKYPGLMSLRSVDLSPASWMSVAWYPIYHIPMGRTIKDLSTCFLTYHTLSSSFQDMDIEDDLEQNVGGGGGG RKKRKEGEGISLAPFGMVSYKMQGDVWVSGNHGWDQERLVSMVSVADSWLKQLRVQHHDFNYFTGLRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	0	1
AT3G06240			F-box family protein (.1)		Lus10011186 [exp]	7.5	0.8420
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10034618 [exp]	8.7	0.8234
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10013842 [exp]	8.8	0.8422
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	12.0	0.8180
AT5G45280			Pectinacetylesterase family pr...		Lus10033301 [exp]	14.1	0.7763
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	14.9	0.8023
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	16.2	0.8325
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	20.7	0.8189
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	21.6	0.7798
AT2G25280			unknown protein		Lus10001925 [exp]	26.9	0.8067

Compare expression of checked genes

Lus10039803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.