Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19485 469 / 7e-151 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018573 [exp] 1789 / 0 AT1G19485 487 / 4e-158 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200900 [exp] 612 / 0 AT1G19485 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G036601 [exp] 515 / 5e-170 AT1G19485 499 / 8e-167 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10039804 pacid=23165039 polypeptide=Lus10039804 locus=Lus10039804.g ID=Lus10039804.BGIv1.0 annot-version=v1.0 ATGGATGAAGAAGGGGAAGAATCGTTAGCCGGCGCCGGAGTTGAGGTTTCCACATTCGATTACTCCGTCGAGAATCACTTGAAGGCAATCGACACGATTT CTGAGGTCTGTGGGGAGTCAGACGCCGGGGATCCTCTCGACGAAGCTGAAATTCAGCTTCTTTCGTCGCCGATAACTTTCTTAAAAGAATGGAAGCATTA CTGCTATCCGGCGAGGGATCTTAGGTTTTCCAGAGAAGCGGAGAGGTCTCAAGTGGATGTAGGAGTTGGATGTGGGATTAATTTACCTCAGTTTTCATCA GCCACTGTTCCTAAGTGCAGCAATGATTTTGTGATGTATGTTGGAGGACCTGTCTGGGCATTAGATTGGTGCCCGCGAAGTCCTGAAAGGCCAGAGACTA AGGTTAAATGTGAGTATGTTGCTGTTGCTGCCCATCCTCCTGGCTCATACTATCACAAGATAGGTTCTCCACTTGTTGGCAGAGGCGTCATTCAAATATG GTCCGTTCTTCATGTGCATAAGAACGAAGAGGAGACACCTTCAGTTATCCGAAAGCCAGATATGGAGGCACAGCTTGTGAAATATGTAGATGACGAATCA AGTGAACCAAAAAGGCCACGAGGAAGGCCTAGGAAGAAGCAAGAGGATGATTCTGCTAAGGTCAAGAAGCCAAAAGGAAGACCCAGAAAGAAGCCAGTTG ACGAACCAGGAAACACGCCTATTGATGAATTAAACTGTGATGGCCAAGATATTCAACCTCTTGCTCTAGATTATTCCAGCAGTCCATGTCAACCACGGTT ACCCAGAAAGAAGCTAGATGATGACTCTACAGGAGTCAAGAAGACAAAGGGAAGGCCCAGAAAGAAGGCAATTGATACACCAAGGAACGGGGCAACTGAT GTTTCAGATTGTGATGACCAAGACTTTCAACCTCTTGCTTTTGAATATCCTAGTACAGGTCATCAAGGAAGATCTAGGAAGAAGCTAGACGATAATTCCG TTAAAGTTAAGAAGCCGAAAGGAAGAGCCAGAAAGATACGAATTGATCAACCAACGAACAAGCCAACTGATTGTTTGGATTGCGACGATGAAGATGTTCA ACCTCTTGCATTTGCATACCCCAACAGTTCATATCGACAAGGAAAATCGAGGAAGAAACAAGAGGATGATCCTACTGAAGCCAAGAAGTCAAAAGGAAGA TTTAGCAAGGAGTCTACTGATGTACCAACAAACAGGACAATTGATGGTTTGGAATGTGACGACCAATTTGTTCAAGCTCTTGCTCTAGAATATCCGAACA GTTCATGTCAACCACTAGTTACAGAAAAAGATTCAGCCAACACTAAGGGACAGAGACCGCAAAAGCAAGAGGTTAGGAAAAAAAACTTGTCGAATAAAGC GATACCTACATCCTTATCGAATCATACTGGTGATTCTTCTCAGAATCCGCAGACCAATGAGAATTCCAAAGATGTATGCACTTCAGACGATGGCTTGCAG TGTGGACGATTGAAACGTAAGAGAACTGCAGTAAGTAAGTATGATGATTATGTATGTTCATCATCAGTGAGTCAAGATGAGGGCCAGAATCACAAAACGA ATGACAAGTCCAAACAAGACGCAGCAGCTCTTGGATTGGTTTCAGATCATGTCATCTCAAACACCGACAACCCTCCTCTGTCTATTCCGGAAGACATAGC CTTACCAAGAGTTATGCTGTGTCTAGCACATAATGGAAAAGTGGTTTGGGATGTAAAATGGAAGCCCTGGACAGTATCCAGTGCTAATTTCCCACACCGG ATGGGTTATCTAGCTGTTTTGCTAGGAAACGGATCCATAGAAGTATGGGATGTTCCTCTTCCTCATATTGTAAAATCAATTTACTCCGCTGCACATGGGG AAGGATCTGATCCTCGCTTTATGAAACTGGATCCGATCTTCAGATGTTCAGTTCCACAAAGTGGACAGGTGAAGAGCATCCCTTTGACAGTGGAGTGGTC ATACTCACAACCTCATGATTACTTACTTGTTGGGTGCCATGATGGAACGGTTGGTTTGTGGAAATTCATCGCAAATAGATCAGCTGGAGATACGAGGCCT CTGCTATGCTTCAGCGCTGAAACGGGTCCTGTCAGGGCAATCACGTGGGCCCCAGCCGAGAGTGGTGAAGCTAGTGAACATTTAATCCTGACAGCGGGAC ATAAAGGCTTGAAGTTTTGGGATTTGCGTGATCCATTTCGGCCTCTTTGGGAGCTTCGGCCTGCACCAGGTTTCATATACAGTGTGGAATGGGTGTCACG TCCAAGTTGTGTATTGCTATCCTATGCGGATGGAACAATTAGACTCATCAGTTTGGTGAAAGCTGCATATGACGCTGCTGTCTATGGAGAACCATCTGTC AGACCACAGCAGCAAGGGATGCACATTATCGATTGTTCATCCTTTGCGATCTGGAGCCTTCAGGTGTCCAAAATAACAGGAATGGTAGCATACTGTTCTG CCGATGGTACTGTTAGCCGCTTCCAGCTCACCAGTAAAGCAGTGGAGAAAGATCCGTCGAGGAACCGAGTCCCTCATTTCGCATGCGGTTCGGTCACCGA GGATGCATCTGGCGGCCTAGTGGTCAACACTCCACTACCGAACACCCTAACTACAAAGAAGCCTCCCAAGATCAACGCCAATCCACGCTACCTCAGTGGC TTACTGATGACGATGAGCAAGGACGAGAAGGAGAAAGCCAACAGTCAACAGCTCGTGTTACGCGATGGCGATGGTGATCCAGACACAAATTTCGAATCTG AAGAAGAGACGCTGGCTACCATTCGAACGGAGTCGAAGAAGTCCTCCTCTGACTCAGCAAAGGAGCCAATTTCGAAATGTGGAGTAGACCATGAACGGGT CGAGAAGGGAAGAAGTAACAGTGTGAGGCAAGCACTGGTACCAAAAAGGGACGAGACCGCCACAGAGGGGGGAACCGAACGCCTGCCATCGAAACTGGTG GCAATGCACAGAGTGAGGTGGAACATGAACAAGGGGAGCGAGAGATGGCTGTGTTCCGGAGGTGCTGCCGGAATCGTACGATGCCAAGAGATTGTGTTGT CTGACATTGATATGGTGGTGGCCAAGAGAAGATAG
AA sequence Show only first row Show all	>Lus10039804 pacid=23165039 polypeptide=Lus10039804 locus=Lus10039804.g ID=Lus10039804.BGIv1.0 annot-version=v1.0 MDEEGEESLAGAGVEVSTFDYSVENHLKAIDTISEVCGESDAGDPLDEAEIQLLSSPITFLKEWKHYCYPARDLRFSREAERSQVDVGVGCGINLPQFSS ATVPKCSNDFVMYVGGPVWALDWCPRSPERPETKVKCEYVAVAAHPPGSYYHKIGSPLVGRGVIQIWSVLHVHKNEEETPSVIRKPDMEAQLVKYVDDES SEPKRPRGRPRKKQEDDSAKVKKPKGRPRKKPVDEPGNTPIDELNCDGQDIQPLALDYSSSPCQPRLPRKKLDDDSTGVKKTKGRPRKKAIDTPRNGATD VSDCDDQDFQPLAFEYPSTGHQGRSRKKLDDNSVKVKKPKGRARKIRIDQPTNKPTDCLDCDDEDVQPLAFAYPNSSYRQGKSRKKQEDDPTEAKKSKGR FSKESTDVPTNRTIDGLECDDQFVQALALEYPNSSCQPLVTEKDSANTKGQRPQKQEVRKKNLSNKAIPTSLSNHTGDSSQNPQTNENSKDVCTSDDGLQ CGRLKRKRTAVSKYDDYVCSSSVSQDEGQNHKTNDKSKQDAAALGLVSDHVISNTDNPPLSIPEDIALPRVMLCLAHNGKVVWDVKWKPWTVSSANFPHR MGYLAVLLGNGSIEVWDVPLPHIVKSIYSAAHGEGSDPRFMKLDPIFRCSVPQSGQVKSIPLTVEWSYSQPHDYLLVGCHDGTVGLWKFIANRSAGDTRP LLCFSAETGPVRAITWAPAESGEASEHLILTAGHKGLKFWDLRDPFRPLWELRPAPGFIYSVEWVSRPSCVLLSYADGTIRLISLVKAAYDAAVYGEPSV RPQQQGMHIIDCSSFAIWSLQVSKITGMVAYCSADGTVSRFQLTSKAVEKDPSRNRVPHFACGSVTEDASGGLVVNTPLPNTLTTKKPPKINANPRYLSG LLMTMSKDEKEKANSQQLVLRDGDGDPDTNFESEEETLATIRTESKKSSSDSAKEPISKCGVDHERVEKGRSNSVRQALVPKRDETATEGGTERLPSKLV AMHRVRWNMNKGSERWLCSGGAAGIVRCQEIVLSDIDMVVAKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19485			Transducin/WD40 repeat-like su...		Lus10039804 [exp]	0	1
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10016045 [exp]	2.8	0.8668
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	5.7	0.8700
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	9.7	0.8820
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	13.0	0.8616
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	14.9	0.8768
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	17.7	0.8586
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10038820 [exp]	20.0	0.8396
AT5G59250			Major facilitator superfamily ...		Lus10040771 [exp]	21.6	0.8395
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	23.2	0.8565
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	24.0	0.8469

Compare expression of checked genes

Lus10039804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.