Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) AT2G44770 268 / 6e-91 ELMO/CED-12 family protein (.1) AT3G03610 269 / 2e-90 ELMO/CED-12 family protein (.1) AT3G60260 263 / 3e-89 ELMO/CED-12 family protein (.1.2.3.4) AT1G67400 259 / 3e-87 ELMO/CED-12 family protein (.1) AT3G43400 164 / 1e-50 ELMO/CED-12 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018574 [exp] 454 / 4e-164 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1) Lus10024285 [exp] 271 / 4e-92 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1) Lus10037017 [exp] 266 / 4e-90 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1) Lus10015790 [exp] 263 / 7e-89 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1) Lus10009523 [exp] 259 / 1e-86 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1) Lus10020344 [exp] 256 / 2e-85 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1) Lus10003841 [exp] 235 / 6e-76 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G136200 [exp] 312 / 4e-107 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1) Potri.002G138700 [exp] 270 / 1e-91 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.014G049800 [exp] 266 / 5e-90 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) Potri.010G060700 [exp] 259 / 4e-87 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.008G175301 [exp] 256 / 5e-86 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.013G069000 [exp] 241 / 7e-80 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [flax] [poplar] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Lus10039805 pacid=23165367 polypeptide=Lus10039805 locus=Lus10039805.g ID=Lus10039805.BGIv1.0 annot-version=v1.0 ATGGTTGGTCCACGATGGCTAGGAGGTCTTTTCAGTCTATTCAGCAAACCGGCTGACAAGTACCCTAACAACAACCCTCATCTGGAGCAAAGACTCGGTC GGCTTCAGAAACGAGTCCAGACCCCCTTCGATGAAACTCGTCCTGACCATCAAGAAGCACTCAAGTCACTTTGGAGTACATCCTTTCCAGACGTTCCCCT GATAGGAATGATCTCCGAGCAGTGGAAAGACATGGGGTGGCAGGGTGTCAATCCTGCAACTGACTTCAGGGGATGTGGGTTCACAGCACTCGAGAACTTG CTGTTCTTCGCCAGGACTTACCCGGCATCTTTCCGCAGGCTATTGTTCAAGCAGAGCGGAGAACGATCCGAATGGGAATATCCATTCGCTGTCGCTGGCA TCAACGTCGCGTACATGCTCATCCAAATGCTGGATCTTCAATCAGAAAAGCCAAGCTCCAAGCCAGGAACCAGCTTCCTTAAACTACTAGGAGAAGATGA AACTGCGTTTGATGTCCTCTTCTGCATAACTTTCCAACTGATGGATGCTCAGTGGCTCGCCATGCGTGCTTCCTACATGGAGTTTAGTGAGGTTCTTCAA GTGACGAGAGCGCAGCTGGAAAGGGAGTTAGTGTTAGAAGACATACACAGAGTAATAGATTTGCCGGCGTACCTATTACTATATCAATAG
AA sequence Show only first row Show all	>Lus10039805 pacid=23165367 polypeptide=Lus10039805 locus=Lus10039805.g ID=Lus10039805.BGIv1.0 annot-version=v1.0 MVGPRWLGGLFSLFSKPADKYPNNNPHLEQRLGRLQKRVQTPFDETRPDHQEALKSLWSTSFPDVPLIGMISEQWKDMGWQGVNPATDFRGCGFTALENL LFFARTYPASFRRLLFKQSGERSEWEYPFAVAGINVAYMLIQMLDLQSEKPSSKPGTSFLKLLGEDETAFDVLFCITFQLMDAQWLAMRASYMEFSEVLQ VTRAQLERELVLEDIHRVIDLPAYLLLYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10039805 [exp]	0	1
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	3.6	0.9617
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	7.3	0.9571
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	8.5	0.9573
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	8.8	0.9254
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10016759 [exp]	9.5	0.9388
AT5G65880			unknown protein		Lus10011719 [exp]	13.2	0.8889
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	14.3	0.9427
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	14.7	0.9431
AT5G02640			unknown protein		Lus10023327 [exp]	16.5	0.8761
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	17.1	0.9418

Compare expression of checked genes

Lus10039805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.