Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14830 181 / 3e-51 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G34220 119 / 2e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 112 / 1e-26 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G19710 111 / 1e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 108 / 3e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 106 / 6e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G79910 103 / 6e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G51900 99 / 2e-21 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 95 / 2e-21 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G52315 89 / 4e-19 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018577 [exp] 810 / 0 AT2G14830 170 / 8e-47 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10033703 [exp] 394 / 2e-132 AT2G14830 210 / 8e-62 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 127 / 1e-31 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 127 / 2e-31 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 121 / 1e-29 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 120 / 2e-29 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 115 / 6e-27 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 111 / 3e-26 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10040542 [exp] 113 / 4e-26 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135700 [exp] 246 / 6e-74 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G038600 [exp] 166 / 2e-44 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.011G122800 [exp] 150 / 1e-40 AT2G14830 137 / 5e-36 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 125 / 9e-31 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 123 / 7e-30 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.010G127000 [exp] 119 / 3e-29 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 115 / 2e-27 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 114 / 1e-26 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 105 / 4e-25 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.004G100900 [exp] 102 / 6e-23 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10039808 pacid=23165194 polypeptide=Lus10039808 locus=Lus10039808.g ID=Lus10039808.BGIv1.0 annot-version=v1.0 ATGTTCGATTGCTTGCTCGGATGGCGAAAAGCTTCGAAATGCAAGAGGACTGTGAGGAGGCTGCAAGTGCGAATGAGATCGATGCGGAACAAGCGGCAAT CGATGGCGAGACAGTCGAGAGAGGACGTCGTCCAGCTCATCAAGCTTGGCTGCCACAACATTGCTCTCGACAGGGTGGAGCAGGTGGTGAAGGATGAGGA GATGGTGAAAGTCTACGAATTGCTCGACAATTATTGCGATGTCATCTCGATCAACCTCGCCTACATTCGAAAGCGGAAGGACCTTCCGAATGACATCAAC GAAGCGGTCTCGAGCCTGGTGTTTGCATCTGCGAGGATCGGCGACCTCCCCGAGCTTCAAGTCGTCCGCGAACTCGTCGAGGATCGCTACGGACCGCGGT TTGAGAGGGCTGCTGTTGATCTCCTGCCTGGAAACCATGTCAACCATCAGGTTAGACAGAAGCTGACGGTTGAACCGGTTCCTGACGATGTGAAACTGAG ATTAATCGACAAGATCGCGAGGGATAATCGATTGTTGCCGGAGATTGTCGTGCTGGATTGCCCTCAAGAATCGAAACAGGAGAAATTGGCAAATTCTGAC GATCAAAAACTTTCCAGGGGGAAGAAACCTGAGGACAATTCTGAAGGGAAAGGTTTGTACTCCGATGCGTGGTCGAGCAGCTTCAGCTCGAACCTGCCGA CTTCCAGCAGCCAGAATTCATTCTCGGCCGTGTCTTCTTTTAGCTACTCCGCATTGGCTCATTCATCTCAGGACGAATTGGAAAACCTGATGAACCGTAT CGGTACAAAGGAAACCCTGATGCCTTACATGACAGGTTCCAAAGCTGAAGAAGAATCTTCAGGAAAGATGATTGATTACATCGACGACGTAGAAGAATCT TCGAGGGAAGGAGGATTCGAGGACCAGATGATTTTCAAGTTCAGGACGGGGAAAGCTGACGAGATGACCGACTACATGGATACGGACGAGTACGGAAAAA TCAGGTCTAGAAGGAGGGGGAAGAGTAATAGTAGTAGTTTCAGGAAAAGATCGAGAAAGCGGTCGTTTTCCAAGGAGATTCCTGAACTAGTTCTCGAAGA CTTAATGTACTACGAAAACCCGTCCTGGAATAGGCCACCGAACCCGAGACAAGGATCGCACGAGTCAGAGCTTACTAATTACAAACCCGGTAAGCGGAAC AAGGGGAGAAATGATGGGAAGATGGACGAGGGTAGCTCAGTTGGTAGCAATTTGTGCTCTCCTGACGAGCGAAGGAGAAGTATGAAGCCACCCTATGGGA GAACAATGTCGATGCCACAAGAAAGGTACAACGATCTTGATCCTGATCGTCAGCCGGAGAACATTTCGAGGACATTGTCGTTCCCGAATCAGTCCCCGAA CCATGTCCATCCTAAGCTTCCAGACTATGATGATCTAGCAGCTAAGTTTAAGGCTCTGAAGAAGGAACATCAAATTCAAAGGCATAGGCTTTATTGA
AA sequence Show only first row Show all	>Lus10039808 pacid=23165194 polypeptide=Lus10039808 locus=Lus10039808.g ID=Lus10039808.BGIv1.0 annot-version=v1.0 MFDCLLGWRKASKCKRTVRRLQVRMRSMRNKRQSMARQSREDVVQLIKLGCHNIALDRVEQVVKDEEMVKVYELLDNYCDVISINLAYIRKRKDLPNDIN EAVSSLVFASARIGDLPELQVVRELVEDRYGPRFERAAVDLLPGNHVNHQVRQKLTVEPVPDDVKLRLIDKIARDNRLLPEIVVLDCPQESKQEKLANSD DQKLSRGKKPEDNSEGKGLYSDAWSSSFSSNLPTSSSQNSFSAVSSFSYSALAHSSQDELENLMNRIGTKETLMPYMTGSKAEEESSGKMIDYIDDVEES SREGGFEDQMIFKFRTGKADEMTDYMDTDEYGKIRSRRRGKSNSSSFRKRSRKRSFSKEIPELVLEDLMYYENPSWNRPPNPRQGSHESELTNYKPGKRN KGRNDGKMDEGSSVGSNLCSPDERRRSMKPPYGRTMSMPQERYNDLDPDRQPENISRTLSFPNQSPNHVHPKLPDYDDLAAKFKALKKEHQIQRHRLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	0	1
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10043203 [exp]	3.0	0.8216
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	3.2	0.8625
AT2G01260			Protein of unknown function (D...		Lus10017987 [exp]	6.3	0.7501
					Lus10033349 [exp]	10.6	0.7035
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	12.0	0.7757
AT5G62750			unknown protein		Lus10004267 [exp]	12.0	0.8498
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	15.1	0.8178
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	17.3	0.7853
					Lus10002237 [exp]	20.2	0.7765
					Lus10026124 [exp]	22.0	0.7445

Compare expression of checked genes

Lus10039808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.