Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03430 1465 / 0 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) AT4G38590 154 / 5e-38 BGAL14 beta-galactosidase 14 (.1.2) AT3G17040 69 / 9e-12 HCF107 high chlorophyll fluorescent 107 (.1.2) AT5G41770 65 / 2e-10 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 57 / 5e-08 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G13210 56 / 2e-07 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 55 / 2e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11964 49 / 2e-05 RNA binding;RNA binding (.1) AT5G28740 49 / 2e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018580 [exp] 1888 / 0 AT4G03430 1566 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Lus10016906 [exp] 102 / 8e-22 AT3G17040 761 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10034294 [exp] 76 / 7e-14 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 76 / 1e-13 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10037766 [exp] 66 / 2e-10 AT3G17040 753 / 0.0 high chlorophyll fluorescent 107 (.1.2) Lus10022346 [exp] 59 / 2e-08 AT5G28740 905 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041573 [exp] 58 / 5e-08 AT5G28740 1386 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016216 [exp] 45 / 0.0006 AT3G11964 2151 / 0.0 RNA binding;RNA binding (.1) Lus10029327 [exp] 44 / 0.0007 AT3G11964 2127 / 0.0 RNA binding;RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135300 [exp] 1557 / 0 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1) Potri.001G094400 [exp] 76 / 6e-14 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 73 / 9e-13 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.010G145000 [exp] 67 / 4e-11 AT3G17040 797 / 0.0 high chlorophyll fluorescent 107 (.1.2) Potri.004G035600 [exp] 61 / 4e-09 AT5G28740 1418 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G040000 [exp] 44 / 0.0008 AT4G28200 801 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06424 [flax] [poplar] PRP1_N PRP1 splicing factor, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10039811 pacid=23165353 polypeptide=Lus10039811 locus=Lus10039811.g ID=Lus10039811.BGIv1.0 annot-version=v1.0 ATGGTCTTCGTCAGATCTCCCACCGGGGAGACAGTTTCAATCCACCTGAACCCTAGAACCGCCACACTCTCCGCCCTCAAGCGCCTAATCGAATCGCAAA CCCAAATCCCGTCAGCTCACCAGCGATTCCTTCTCAGCCGTCTCCCACACAATGCTTCCGACTCCGACTCTATCCTCCTCTCTCAGCTCGGCGTCACTCA CTACTCAACCTTAACGCTCCACGTCCCTTTCCTCGGCGGCGTCGGCGCCCCTCCTCCAGTCCCGCCGCAGAAGCCCCGCGTGGAGTTCCTCAACTCCCGT CCTCCGGCGAACTATGTCGCAGGTCTCGGACGTGGTGCCACCGGCTTCACCACCCGGTCCGATATCGGTCCGGCAAGAGCAGCGCCGGATCTTCCCGACA GATCTGCGACCACGATTGGAGCTGCTGCTCCTGGTATGGGGAGGGGCGCCGGAGGCGCTCCACCTCCGGTGGAGGAAGAAGACGAGGAAGCGGAGGAGAA AGGGTACGACGAGAATCAGAAGTTCGATGAATTTGAAGGTAATGATGTTGGCTTGTTTGCTTCGACTGAGTATGATGAAGACGATAAGGAAGCCGATGCT GTTTGGGAGGCGATTGATAAGCGTATGGATTCCCGTAGGAAGGATAGGAGGGAAGCTAGGTTGAAGGAAGAGATTGAGAAGTATAGAGCTTCGAATCCTA AGATCACCGAGCAGTTCGCCGATTTGAAGAGGAAGCTCCACGGAATGTCTGCTAACGATTGGGAGAGCATTCCCGATATCGGGGATTACTCTCTGAGAAA CAAGAAAAAAAGGTTTGAAAGCTTCGTCCCTGTTCCTGATACATTGCTTGAGAAGGCTAGGCAAGAGAAAGAACATGTTACTGCATTGGATCCAAAGAGT CGAGGTATCGGGGGGACTGAGACTCCGTGGTCTCAGACTCCGGTGACGGATTTGACTGCTGTTGGTGAAGGTAGAGGTACCGTGTTGTCGATTAAGTTGG ATAGGTTGTCGGATTCGGTTTCTGGACAGACTGTTGTTGATCCGAAAGGTTACTTAACTGATTTGAAGAGTATGAAGATTAATAGTGATGCTGAGGTTTC TGATATAAAGAAGGCTAGGCTGTTGTTGACGAGTGTTATCCAGACTAATCCGAAGCATCCTCCCGGTTGGCTTGCTGCCGCGAGGTTGGAAGAGGTTGCT GGGAAGATTAAGGTGGCGAGGCAGTTGATTTCGAAAGGTTGCGAGGAGTGTCCGAAGAGTGAAGATGTTTGGTTGGAAGCTTGTCGGTTGGCGAGTCCTG ATGAAGCAAAAGGTGTGATAGCGAGGGGAGTGAAGTGCATTCCCGGTTCGGTGAAGCTTTGGTTGCAAGCTTCGAAATTGGAGCACGATGATAAGAGCAG GAGGAGGGTTTTGATGACGGGGATAGAACATATTCCGGATGCGGTTAGGTTGTGGAAAGCAGTGGTGGAGTTGTCGAATGAATCAGAGGCTAGGGCGTTG CTTCACAGGGCTGTCGAATGCTGTCCTTTGCATGTCGAATTATGGCTGGCTTTGGCTCGATTGGAGACTTACGAGCAGGCGAAGAAGGTGTTGAACCACG CTAGGATGAAGCTTCCCAAAGAGCCGGCTATTTGGATAACCGCTGCGAAGTTGGAAGAGGCAAATGGGAACAACACGATGGTTGGGAAAGTGATTGAGAG AGGTATCAGAGCTCTGCAGCGAGAAGGTTTGGCGATTGATAGGGAGGTTTGGATGAGAGAAGCAGAGGCTGCAGAGAAGGCGGGATCCGTCGCGACTTGT CAGGCGATCGTTAATAACACGATCGGGATCGGAGTCGAGGAAGAGGACAGAAAGAGGACTTGGGTGGCTGATGCAGAGGAGTGTATTAAGCGAGGATCTA TCGAGACCGCACGAGCTATCTACGCTCATGCTCTAAGTGTGTTTTTGACCAAGAAGAGTATTTGGTTGAAAGCTGCTCAGCTCGAGAAGAGCCACGGAAC TCGAGAGTCTCTCGATGCTTTTTTGCGGAAGGCGGGTACTTATACTCCACAGACCGAGGTGCTCTGGCTCATGGGTGCAAAGGAGAAGTGGCTTGCTGGT GATGTTCCAGCTGCCAGGGCTATTCTAGATGAAGCTTATAAAGCCATACCAAACTCCGAGGAAATCCTGCTTGCTGCATTTAAGCTCGAATTTGAGAACC ACGAACCTCAAAGAGCGAGGATATTGCTCACCAAAGCGAGAGAGAGTGGAGGGACGGAAAGAGTCTGGATGAAATCTGCCATCGTGGAGAGAGAGTTAGG CAATGCCGACGAGGAAAGGAGGATGCTCGACGAAGGGTTGAAGCGATTCCCGTCTTTTTTCAAACTCTGGTTGATGCTCGGTCAGCTCGAAGAACGGCTT GGTCGGGCAGAAAAAGCTAGGCAGGTTTACGACTCGGGGATAAAGCACTGCCCGAATTGCATACCTCTCTGGCTTTCCATGGCTTCGCTCGAAGAGAAAA TGAATGGGTTGAGTAAAGCTCGAGCTGTGCTGACGATCGCGAGGAAGAGAAACCCGAAAAACCCGGAACTATGGCTTGCGGCTGTCCGTGCTGAATCGAG ACATGGTAAAGGTAAAGAAGCTGAAAGCTTGATGGCCAAGGCTTTGCAGGAGTGTCCCAACAGCGGCATTCTCTGGGCGGCATCGATCGAGATGGCTAAT CGTCCCCAACGTAAAAGCCGCAGTATGGACGCCTTGAAGAAAACCGACAACGATCCACACGTTATCGCTGCCGGTGCAAAGCTGTTCATGCAGGAAAGGA AGGTCGATAAGGCGAGAAGCTGGCTGGGTCGTGCAGTTACAGTCGCACCGGATATCGGTGATTTCTGGGCGCTCTATTACAAGCTCGAACTGCAGCACGG AACTGAAGACACTCAAAGGGAAGTTTTAAAGAAGTGTACTGATGCTGATCCGAAGCATGGCGAGAAATGGCAAGCTGTATCGAAAGCTGTGGAGAATGCC CATCTGAGTACTGAAGCGATTTTGAAGAAAGTGGTTGTTGCTCTTGGGAAAGAACAGAGTGCTTCTGAGAATCAGAATAGCTAG
AA sequence Show only first row Show all	>Lus10039811 pacid=23165353 polypeptide=Lus10039811 locus=Lus10039811.g ID=Lus10039811.BGIv1.0 annot-version=v1.0 MVFVRSPTGETVSIHLNPRTATLSALKRLIESQTQIPSAHQRFLLSRLPHNASDSDSILLSQLGVTHYSTLTLHVPFLGGVGAPPPVPPQKPRVEFLNSR PPANYVAGLGRGATGFTTRSDIGPARAAPDLPDRSATTIGAAAPGMGRGAGGAPPPVEEEDEEAEEKGYDENQKFDEFEGNDVGLFASTEYDEDDKEADA VWEAIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLKRKLHGMSANDWESIPDIGDYSLRNKKKRFESFVPVPDTLLEKARQEKEHVTALDPKS RGIGGTETPWSQTPVTDLTAVGEGRGTVLSIKLDRLSDSVSGQTVVDPKGYLTDLKSMKINSDAEVSDIKKARLLLTSVIQTNPKHPPGWLAAARLEEVA GKIKVARQLISKGCEECPKSEDVWLEACRLASPDEAKGVIARGVKCIPGSVKLWLQASKLEHDDKSRRRVLMTGIEHIPDAVRLWKAVVELSNESEARAL LHRAVECCPLHVELWLALARLETYEQAKKVLNHARMKLPKEPAIWITAAKLEEANGNNTMVGKVIERGIRALQREGLAIDREVWMREAEAAEKAGSVATC QAIVNNTIGIGVEEEDRKRTWVADAEECIKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGTRESLDAFLRKAGTYTPQTEVLWLMGAKEKWLAG DVPAARAILDEAYKAIPNSEEILLAAFKLEFENHEPQRARILLTKARESGGTERVWMKSAIVERELGNADEERRMLDEGLKRFPSFFKLWLMLGQLEERL GRAEKARQVYDSGIKHCPNCIPLWLSMASLEEKMNGLSKARAVLTIARKRNPKNPELWLAAVRAESRHGKGKEAESLMAKALQECPNSGILWAASIEMAN RPQRKSRSMDALKKTDNDPHVIAAGAKLFMQERKVDKARSWLGRAVTVAPDIGDFWALYYKLELQHGTEDTQREVLKKCTDADPKHGEKWQAVSKAVENA HLSTEAILKKVVVALGKEQSASENQNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10039811 [exp]	0	1
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	1.0	0.9386
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	3.9	0.8855
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10000751 [exp]	5.2	0.8439
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	7.9	0.8867
AT3G51650			unknown protein		Lus10009098 [exp]	11.2	0.8703
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	13.8	0.8608
AT1G36990			unknown protein		Lus10042697 [exp]	17.3	0.8700
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	18.3	0.8470
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	18.5	0.8683
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10012331 [exp]	18.6	0.8549

Compare expression of checked genes

Lus10039811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.