Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20780 214 / 2e-67 AtPLT4 Major facilitator superfamily protein (.1) AT3G18830 141 / 1e-39 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16130 138 / 1e-38 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 138 / 2e-38 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT4G36670 125 / 4e-34 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 119 / 2e-31 AtPLT3 Major facilitator superfamily protein (.1) AT5G16150 77 / 1e-16 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT3G51490 74 / 2e-15 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT4G16480 73 / 4e-15 ATINT4 inositol transporter 4 (.1) AT2G35740 71 / 2e-14 ATINT3 nositol transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018581 [exp] 306 / 9e-103 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10023640 [exp] 150 / 6e-43 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10026328 [exp] 142 / 7e-41 AT3G18830 219 / 2e-66 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 142 / 9e-40 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 140 / 2e-39 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 137 / 2e-38 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 137 / 3e-38 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 132 / 2e-36 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 132 / 2e-36 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135200 [exp] 231 / 4e-74 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 195 / 5e-60 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 136 / 8e-38 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 133 / 8e-37 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.004G152300 [exp] 129 / 3e-35 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 124 / 1e-33 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G158700 [exp] 121 / 1e-32 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.006G015300 [exp] 86 / 1e-19 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.017G032200 [exp] 78 / 4e-17 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 78 / 5e-17 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10039812 pacid=23165245 polypeptide=Lus10039812 locus=Lus10039812.g ID=Lus10039812.BGIv1.0 annot-version=v1.0 ATGGGGTTGATGACCATCCCGGAAAATGGCGTCGACGGAGAAATGGGTCTTGATTTGGGAGGTAACAAGAAGACCAACAAGTACAAGAGGATGGAATCAG ATTTCGATTTCGATTTCTATTTCGACGACGCTTCGGATTATATCGAACAGCAGCAGAGGAAGAACAGTACGAGGAAGTATGTTCTCGCCTGCGCCGTCTT TGCTTCTCTCAACTCTGTACTTCTCGGCTACGATGTGGGCGTAATGAGCGGAGCGATCATATTCATCCAAGAAGATCTCCACATAACTGAGGTACAAGAA GAAGTGCTAGTAGGTGCACTAAGCATTTTATCCCTCTTTGGAAGCTTAGCCGGAGGAAGAACATCGGACTACATTGGCCGGAAATGGACAATGGGGTTAG CCGCGGTCGTGTTCCAATCGGGAGCAATCGTGATGACACTCGCCCCGTCATTCCAAACCCTAATGATTAGTCGTCTACTGGCCGGAATTGGAATCGGATT GGGTGTCATGATCGCACCGGTCTACATTTGTCACCCACGGTCAACCGAGGGTCGTTGA
AA sequence Show only first row Show all	>Lus10039812 pacid=23165245 polypeptide=Lus10039812 locus=Lus10039812.g ID=Lus10039812.BGIv1.0 annot-version=v1.0 MGLMTIPENGVDGEMGLDLGGNKKTNKYKRMESDFDFDFYFDDASDYIEQQQRKNSTRKYVLACAVFASLNSVLLGYDVGVMSGAIIFIQEDLHITEVQE EVLVGALSILSLFGSLAGGRTSDYIGRKWTMGLAAVVFQSGAIVMTLAPSFQTLMISRLLAGIGIGLGVMIAPVYICHPRSTEGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039812 [exp]	0	1
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	2.6	0.9474
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	4.9	0.9251
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	4.9	0.8985
AT5G49960			unknown protein		Lus10035805 [exp]	10.1	0.9121
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	12.3	0.9120
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	13.3	0.8892
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	15.6	0.9012
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	16.8	0.9070
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	17.9	0.9044
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	19.6	0.9076

Compare expression of checked genes

Lus10039812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.