Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20780 385 / 9e-132 AtPLT4 Major facilitator superfamily protein (.1) AT3G18830 230 / 2e-71 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G18480 225 / 1e-69 AtPLT3 Major facilitator superfamily protein (.1) AT2G16130 221 / 2e-68 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 220 / 7e-68 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16120 218 / 4e-67 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G43330 151 / 8e-42 ATINT1 inositol transporter 1 (.1) AT3G05165 133 / 2e-35 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 132 / 2e-35 Major facilitator superfamily protein (.1.2) AT3G05150 129 / 8e-34 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018581 [exp] 491 / 2e-173 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 429 / 2e-148 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10031637 [exp] 428 / 4e-148 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10011288 [exp] 239 / 8e-75 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10040482 [exp] 238 / 2e-74 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 230 / 2e-71 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10023640 [exp] 224 / 2e-69 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 224 / 4e-69 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 222 / 2e-68 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135200 [exp] 410 / 1e-141 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 338 / 1e-113 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 247 / 5e-78 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 229 / 6e-71 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 218 / 3e-67 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 214 / 1e-65 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 211 / 2e-64 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G126800 [exp] 134 / 1e-35 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 131 / 1e-34 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.017G116400 [exp] 120 / 3e-31 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10039813 pacid=23165368 polypeptide=Lus10039813 locus=Lus10039813.g ID=Lus10039813.BGIv1.0 annot-version=v1.0 ATGCTTGCGGTGGGGATCATACCGTCGGTTTTCATAGGGTTTGCGCTTTGTGTAATCCCCGAGTCGCCTAGGTGGCTTGTGATGCAGATGCGGATCGCTG AGGCTCGATCGGTTCTGCACAATACGATCGAGGACGAGAAGGAGGTGGATGACCGGCTTGCCGAGATTCTAGCTGCTGCCGGTGCCGGTGGCGGGGTCAG TGATAAGCACCGGCAGAAGGCGGTGTGGCGAGAGATGTTGACACTGTCTCCTGCCCTTAGAAGGATGCTGGTGACCGGTTTTGGAATCCAGTGTTTCCAG CAGATCACCGGTATCGATGCAATGGTGTATTACAGTCCCAAGATTTTCAAGACGGCCGGGATCAAGGACAACACGAAGATCCAGGCTGCCATGGTCGCTG TCGGGGTTTCGAAGACGGTTTTCATACTAGTAGCAATCTTGTTGATAGACAAGCTAGGGAGGAAGCCCTTGTTGTACATCAGCACAATAGGGATGACATT TTGCTTGTTTAGCTTGGGAGTCACGCTAACAACCCTAGCCGGCGATGCCGGGATCGGACTTGCTATCCTCTTCGTGTGCGCGAACGTGGCCTTCTTCTCG GTGGGGATCGGGCCGGTGTGTTGGGTCGTCACCTCGGAGATCTTTCCCCTGAGGCTCCTAGCGCAGGCTGCTGCGCTCGGAGCAGTGGGGAACAGGGTGT GCAGTGGGTTGGTGGCGATGTCTTTCCTTTCGGTCTCGAAGGCCATCTCCGTAGGTGGGACTTTCTTTGTATGTTCGGCTGTTTCGGCTCTCTCGGTGGT GTTTGTGTACTGTTTGGTCCCCGAGACGAAAGGGAAGTCGTTGGAGGAGATCGAGGTGATGTTTGAGGGCGAACTTCAGGGGTGGCGGGGTGGTGGTGGT GAGGTGGAAATGGGCGATGCTGAGCGCCTCGTTGAAGGCAAATGA
AA sequence Show only first row Show all	>Lus10039813 pacid=23165368 polypeptide=Lus10039813 locus=Lus10039813.g ID=Lus10039813.BGIv1.0 annot-version=v1.0 MLAVGIIPSVFIGFALCVIPESPRWLVMQMRIAEARSVLHNTIEDEKEVDDRLAEILAAAGAGGGVSDKHRQKAVWREMLTLSPALRRMLVTGFGIQCFQ QITGIDAMVYYSPKIFKTAGIKDNTKIQAAMVAVGVSKTVFILVAILLIDKLGRKPLLYISTIGMTFCLFSLGVTLTTLAGDAGIGLAILFVCANVAFFS VGIGPVCWVVTSEIFPLRLLAQAAALGAVGNRVCSGLVAMSFLSVSKAISVGGTFFVCSAVSALSVVFVYCLVPETKGKSLEEIEVMFEGELQGWRGGGG EVEMGDAERLVEGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039813 [exp]	0	1
AT2G42700			unknown protein		Lus10017646 [exp]	3.9	0.9101
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	6.9	0.9259
AT2G43590			Chitinase family protein (.1)		Lus10010862 [exp]	8.1	0.9036
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	8.7	0.9196
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	11.2	0.9177
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	11.6	0.9238
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	13.2	0.9168
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	14.7	0.9171
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	16.2	0.9167
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	16.2	0.9194

Compare expression of checked genes

Lus10039813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.