Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 188 / 2e-57 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 187 / 7e-57 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 172 / 5e-51 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 152 / 9e-44 ATSEH soluble epoxide hydrolase (.1) AT4G15955 151 / 2e-43 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 142 / 6e-40 alpha/beta-Hydrolases superfamily protein (.1) AT2G14260 49 / 2e-06 PIP proline iminopeptidase (.1.2) AT4G12830 46 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1) AT5G53050 44 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036177 [exp] 363 / 4e-126 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 355 / 7e-123 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 355 / 7e-123 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 346 / 1e-119 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 328 / 2e-112 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 327 / 5e-112 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 320 / 3e-109 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10028340 [exp] 214 / 1e-67 AT3G51000 422 / 6e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 199 / 1e-61 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134800 [exp] 469 / 6e-168 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 462 / 3e-165 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 392 / 7e-138 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 354 / 1e-122 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 211 / 3e-66 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 201 / 9e-63 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 200 / 2e-62 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 183 / 9e-56 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 182 / 5e-55 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 172 / 3e-51 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10039814 pacid=23165083 polypeptide=Lus10039814 locus=Lus10039814.g ID=Lus10039814.BGIv1.0 annot-version=v1.0 ATGGAGGACATCAAGCACAGCCATGTCGAAGTCAGAGGACTCAAGCTCCACGTCGCCGAAACTGGCACCGGCTCTGAGGTGGTGATGTTCCTACACGGGT TCCCGGAGATATGGTACACTTGGAGGCACCAGATGATCGCTGCTGCCAAGGCCGGATATCGAGCCATCGCGTTCGATTTCCGAGGCTACGGACTTTCGGA CCAGCCTCCGGTGCCCGAGGAAGGATCCTTCATGGACCTTGTCCATGATACCGTTGGCCTGCTCGACGCTCTTTCCATCCCCAAGGTGTTCCTAGTCGGG AAGGACTTCGGAGTGATGCCGGCATACATGGTATCAATTCTCCACCCGGATCGGGTGGCCGGACTGATCACGATCGGCATTCCTTTCGTGCTACCCGGTC CGGACGGCCTGAAGAACCACCTCATGCCTAAGGGCTTCTACATAAACAGGTGGCAGGAGCCAGGGAGGGCCGAGGCTGATTTCGGAAGGCTCGATGTTAA GACTGTGATAAAAAACATCTACATTCTCTTTTCTGCTTCCGAGCCAGCAACTGCCACAAGTGATAACCAGGAGATCATGGACTTGGTTCCGAAATCTACA CCCCTACCGCCATGGTTCTCCGAGGAGGACCTCGAAGTCTACACTTCGTTGTACGAGAAATCAGGGTTCCGTTACGCTCTCCAGGTTCCATATAGGACAC TGGGGATAGATTGCGGGATAACTAACCCGAAAATTGGAGCTCCTTCGTTGTTGATCATGGGGCAAAAGGACTATGTGATGAAGTTTCCGGGCATGGAGGA GTACATCAAGAGTGGGAAAGTGAAGCACTTTGTACCTGATCTGGAGATTGTGTTCCTCGAAGATGGCAACCATTTTGTTCATGAGAAGCTTCCGGAAAAA GTCAACGAGCTCCTCGTTGACTTCCTCAACAAGCACAAGAAGTGA
AA sequence Show only first row Show all	>Lus10039814 pacid=23165083 polypeptide=Lus10039814 locus=Lus10039814.g ID=Lus10039814.BGIv1.0 annot-version=v1.0 MEDIKHSHVEVRGLKLHVAETGTGSEVVMFLHGFPEIWYTWRHQMIAAAKAGYRAIAFDFRGYGLSDQPPVPEEGSFMDLVHDTVGLLDALSIPKVFLVG KDFGVMPAYMVSILHPDRVAGLITIGIPFVLPGPDGLKNHLMPKGFYINRWQEPGRAEADFGRLDVKTVIKNIYILFSASEPATATSDNQEIMDLVPKST PLPPWFSEEDLEVYTSLYEKSGFRYALQVPYRTLGIDCGITNPKIGAPSLLIMGQKDYVMKFPGMEEYIKSGKVKHFVPDLEIVFLEDGNHFVHEKLPEK VNELLVDFLNKHKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	0	1
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	2.0	0.8587
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	4.0	0.8115
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	6.0	0.8023
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	9.6	0.7490
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	12.7	0.7789
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10010854 [exp]	13.9	0.7722
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	16.1	0.7984
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	16.9	0.8027
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	18.6	0.7610
					Lus10043166 [exp]	19.2	0.7340

Compare expression of checked genes

Lus10039814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.