Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20760 181 / 1e-54 Clathrin light chain protein (.1) AT2G40060 145 / 9e-42 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 140 / 6e-40 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018582 [exp] 368 / 2e-127 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10018480 [exp] 169 / 6e-50 AT2G20760 239 / 4e-77 Clathrin light chain protein (.1) Lus10011194 [exp] 167 / 2e-49 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10004389 [exp] 137 / 1e-38 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 134 / 2e-37 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10030401 [exp] 120 / 4e-32 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10037839 [exp] 87 / 1e-19 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G102000 [exp] 187 / 2e-56 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.011G049500 [exp] 158 / 6e-46 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.004G040100 [exp] 155 / 8e-45 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1) Potri.016G114700 [exp] 150 / 2e-43 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.008G066800 [exp] 143 / 6e-41 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.010G190400 [exp] 138 / 4e-39 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [flax] [poplar] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Lus10039815 pacid=23165097 polypeptide=Lus10039815 locus=Lus10039815.g ID=Lus10039815.BGIv1.0 annot-version=v1.0 ATGGCCCCTCCGTTCGATTCATTCGCCGTCGAAGGAGAACAACAAACCACATCCTCCACCGCCGCATCCCTTCCTACTCCACCGCCGCCGCCACCGTTCG GAGACGAAGAAAACGACAATGGCTTCATGTCCTCCTCCTCCCATGATCGCCACCCTTCTCAACATTTCGACGATTCCTCCGCTGCCGGATTCTTCTCGGC CGACGCTCCTCATCCGCCGCCGTCGAATCCCTTCCCTGACGAAGACCCTACCGTCGATTACGGATCTCCGTTTGAGACAAATGATGGTGGAGATGTTGGC GGTGGCGGGAGCATTTTTGTTTTGGAGGGTGGCCCTGTTCTGCCGGATCATACTCAGATGGTGGAGGAAGGTTCCCGGCGACGGGAGTGGCGCCGGCAAA ATGCGATTGATTTGGAGGAGAAGGAGAAGAAGGAGAAGGAGATGAGGAACCAAATCATCAATGAAGCGGAGGGGTACAAGCGGATGTTCTACGAGATGCG GAACCAGAACTGCGAGACCAATAAGACTCAAAACCGAGAACGAGAGAAGCTATACCATGCAAACCAAGAGAAGTTTCACAAGGAAGCAGCAGACATCAAC TACTGGAAAGCCATAGCAGAGATCATCCCAAGGGAAGTGGCCAAGCTAGAGACCAGGAGATCATCAGCAACATCCAAGAACAAGGATTCTAATCAGAAGC AAACAGGATCAATGATCGTCGTTCAAGGACCGAAACCCGGGAAGCCAACCGACATGGTCAGGATGAGACAGATCATCTTCAAGCTGAAACAGAACCCTCC TCCCCACATGATGCCCCCTCCTCCTCCTCCAGCCAAGGATGACAAAAAGAAGGAAGAAGAGAAAAATGATGATGATGTCAAGAAATTACCCTCAGAATCT GATGATGGTAAAAAGCCAAGTTCAGGACCTGATGAGAAGCCTGAGAAAGATTAA
AA sequence Show only first row Show all	>Lus10039815 pacid=23165097 polypeptide=Lus10039815 locus=Lus10039815.g ID=Lus10039815.BGIv1.0 annot-version=v1.0 MAPPFDSFAVEGEQQTTSSTAASLPTPPPPPPFGDEENDNGFMSSSSHDRHPSQHFDDSSAAGFFSADAPHPPPSNPFPDEDPTVDYGSPFETNDGGDVG GGGSIFVLEGGPVLPDHTQMVEEGSRRREWRRQNAIDLEEKEKKEKEMRNQIINEAEGYKRMFYEMRNQNCETNKTQNREREKLYHANQEKFHKEAADIN YWKAIAEIIPREVAKLETRRSSATSKNKDSNQKQTGSMIVVQGPKPGKPTDMVRMRQIIFKLKQNPPPHMMPPPPPPAKDDKKKEEEKNDDDVKKLPSES DDGKKPSSGPDEKPEKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	0	1
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	1.4	0.9471
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	2.8	0.9130
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	3.0	0.9163
					Lus10021343 [exp]	3.6	0.8741
					Lus10031379 [exp]	4.2	0.9348
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	5.5	0.8924
AT1G23965			unknown protein		Lus10030844 [exp]	6.7	0.8951
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10033630 [exp]	9.6	0.8343
					Lus10025831 [exp]	10.0	0.8468
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	10.2	0.8501

Compare expression of checked genes

Lus10039815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.