Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28250 370 / 9e-131 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 338 / 5e-118 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 216 / 6e-70 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 186 / 2e-58 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 176 / 7e-55 EXPB6 beta expansin 6 (.1) AT3G60570 176 / 2e-54 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT1G12560 111 / 3e-29 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1) AT4G17030 106 / 2e-27 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT3G15370 105 / 7e-27 ATHEXPALPHA1.24, ATEXP12, ATEXPA12 expansin 12 (.1) AT1G62980 102 / 4e-26 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018583 [exp] 498 / 0 AT4G28250 398 / 1e-141 expansin B3 (.1.2) Lus10038933 [exp] 214 / 1e-68 AT1G65680 301 / 1e-102 expansin B2 (.1) Lus10036066 [exp] 211 / 3e-68 AT1G65680 286 / 1e-97 expansin B2 (.1) Lus10033700 [exp] 166 / 1e-49 AT1G65680 233 / 2e-75 expansin B2 (.1) Lus10031638 [exp] 166 / 1e-48 AT2G20770 238 / 3e-76 GCR2-like 2 (.1) Lus10011012 [exp] 123 / 6e-34 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10001010 [exp] 122 / 1e-33 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10040149 [exp] 120 / 5e-33 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10001009 [exp] 119 / 4e-32 AT4G17030 308 / 2e-106 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134300 [exp] 399 / 5e-142 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 392 / 2e-139 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 216 / 7e-70 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.001G151500 [exp] 117 / 1e-31 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.001G112900 [exp] 110 / 5e-29 AT1G12560 364 / 5e-128 expansin A7 (.1) Potri.003G083200 [exp] 108 / 2e-28 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G401700 [exp] 107 / 1e-27 AT3G15370 348 / 2e-122 expansin 12 (.1) Potri.009G141400 [exp] 104 / 2e-26 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G001100 [exp] 103 / 2e-26 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.004G181700 [exp] 103 / 3e-26 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10039816 pacid=23165318 polypeptide=Lus10039816 locus=Lus10039816.g ID=Lus10039816.BGIv1.0 annot-version=v1.0 ATGCAGCTGATTTCGTTTACCACTCTGTTTTTCGCCTCCGTCATCTTCTTCACCGTCTCCAGCCAGGTCCCAGTCCACCACCCTGCAGCCTCCGACGACC ACCATTGGCACCCCGCCACCGCCACCTGGTACGGCAGCCCAGAAGGCGACGGCAGCGACGGAGGGGCGTGCGGGTACGGGTCGATGGTGGATGTGAAGCC GCTCCGGGCGCGGGTCGGAGCGGTGAGCCCAGTTCTTTTCCGGAGCGGGGAAGGATGCGGAGCTTGCTACAAGGTGAAGTGCTTGGACAAGAGCATTTGC TCCAGAAGGGCGGTCACCGTAATTGTCACCGACGAGTGTCCAGGCGGGTACTGCTCCGGTGGAAAAACCCACTTCGATCTCAGTGGAGCTGCATTCGGAC GCATGGCCTTCGCCGGCGAAGCCGGCATGCTCCGGAACAAGGGCGAGCTCCCCGTCATTTTCCGACGGACTCCGTGTAAATACCCTGGGAAGAACATAGC GTTCCATGTGAACGAAGGCTCGACGGACTTCTGGTTGTCGCTGCTTGTGGAGTTCGAGGATGGTGATGGCGACGTCGGTTCCATGCACATCCGACAGGGA GGTGGGAGTGAGTGGATGGAGATGAAGCATGTGTGGGGAGCAACATGGTGCATAGTTGGTGGGCCATTGAGAGGTCCATTCTCAGTGAAGCTCACCACTC TGTCTACAGGGAAATCCCTCTCAGCTAGGGATGTTATCCCTAGCAACTGGTCTCCCAAGGCCACTTACACTTCACGCCTCAACTTCCTCCACTAG
AA sequence Show only first row Show all	>Lus10039816 pacid=23165318 polypeptide=Lus10039816 locus=Lus10039816.g ID=Lus10039816.BGIv1.0 annot-version=v1.0 MQLISFTTLFFASVIFFTVSSQVPVHHPAASDDHHWHPATATWYGSPEGDGSDGGACGYGSMVDVKPLRARVGAVSPVLFRSGEGCGACYKVKCLDKSIC SRRAVTVIVTDECPGGYCSGGKTHFDLSGAAFGRMAFAGEAGMLRNKGELPVIFRRTPCKYPGKNIAFHVNEGSTDFWLSLLVEFEDGDGDVGSMHIRQG GGSEWMEMKHVWGATWCIVGGPLRGPFSVKLTTLSTGKSLSARDVIPSNWSPKATYTSRLNFLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Lus10039816 [exp]	0	1
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Lus10040548 [exp]	4.0	0.7110
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	14.5	0.7246
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	22.0	0.7193
					Lus10043166 [exp]	28.0	0.6862
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	30.8	0.7057
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	37.9	0.7026
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	42.4	0.6666
AT2G19090			Protein of unknown function (D...		Lus10020009 [exp]	42.7	0.6956
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10028499 [exp]	46.5	0.6328
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Lus10000661 [exp]	59.0	0.6864

Compare expression of checked genes

Lus10039816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.