Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20740 251 / 2e-84 Tetraspanin family protein (.1.2.3) AT2G20230 119 / 4e-32 Tetraspanin family protein (.1) AT4G28770 114 / 4e-30 Tetraspanin family protein (.1.2) AT1G32400 89 / 5e-21 TOM2A tobamovirus multiplication 2A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018584 [exp] 388 / 3e-138 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10030939 [exp] 125 / 1e-34 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3) Lus10022841 [exp] 122 / 2e-33 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1) Lus10011910 [exp] 122 / 2e-33 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1) Lus10011042 [exp] 109 / 2e-28 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3) Lus10003011 [exp] 107 / 4e-28 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3) Lus10040108 [exp] 76 / 2e-16 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G101800 [exp] 252 / 6e-85 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.013G134200 [exp] 247 / 6e-83 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.011G050900 [exp] 188 / 6e-60 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 184 / 4e-58 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3) Potri.001G146100 [exp] 111 / 2e-29 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.003G087800 [exp] 108 / 5e-28 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.002G253500 [exp] 105 / 9e-27 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1) Potri.018G038400 [exp] 91 / 1e-21 AT2G20740 109 / 4e-29 Tetraspanin family protein (.1.2.3) Potri.006G241400 [exp] 84 / 2e-19 AT2G20740 108 / 1e-28 Tetraspanin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10039817 pacid=23165003 polypeptide=Lus10039817 locus=Lus10039817.g ID=Lus10039817.BGIv1.0 annot-version=v1.0 ATGACGAGGGTGATGAGGAGCTGCGTTCAATCGATACTGAAGCTGGTGAATTCAGTCGGCGGCATGGTTGGGTTAGGGATGGTTCTGTATGCGGTTTGGC TGATTAGGGCTTGGCAGAGGGAAACTGGTGAATTCCCCTTCGGAGATTTCGATAATATCTCTGCGCCCTGGTTCATTTACACTTTCCTAGGTCTTGGTGC TTCTTTATGTGTTATCTCATGCTTCGGCCATGTTTCTGCGGAAATCGCCAATGGTTGTTGCCTCTATTTCGTATCCTTAGCTCGAAAGTACATGTTTTTC ATGTTCCTACTGATAATGCTCGAAGCTGCCGTGACAGTAGATGTGTTCCTGAACCGAGATTGGGAGAAGGACTTCCCTAAGGACCCGAGCGGGTGTTTTG ACCGGTTCAAAGGTTTCATCCGGTCGCACTTCGAGATATGCAAATGGGTCGGCTTGTCAATCGTTGCTGTCCAGGCACTATCATTTCTCCTTGCCATGGT ACTCAAAGGTCTCGGCCCCCATCCGTACTATTACGACAGTGACGACGATTTCATCCCAGAAAGAGCTCCCCTTCTAAGGCACCCGGTCTATCAACCCAGT TATGTCGTTGGAAACCCGATTCTTGCACCAAGAACCGACTCATGGAACGCACGGGTTAACGAGAAGGTAAGAGAGTGTACCTTCGTATTGGCAGCAGCTA TTATTCTATCGGATTGCTTGCTGGTTAACCCAACTGGTTCTGATTTTCAGGTCCGGTAA
AA sequence Show only first row Show all	>Lus10039817 pacid=23165003 polypeptide=Lus10039817 locus=Lus10039817.g ID=Lus10039817.BGIv1.0 annot-version=v1.0 MTRVMRSCVQSILKLVNSVGGMVGLGMVLYAVWLIRAWQRETGEFPFGDFDNISAPWFIYTFLGLGASLCVISCFGHVSAEIANGCCLYFVSLARKYMFF MFLLIMLEAAVTVDVFLNRDWEKDFPKDPSGCFDRFKGFIRSHFEICKWVGLSIVAVQALSFLLAMVLKGLGPHPYYYDSDDDFIPERAPLLRHPVYQPS YVVGNPILAPRTDSWNARVNEKVRECTFVLAAAIILSDCLLVNPTGSDFQVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	0	1
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	2.0	0.9085
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	2.2	0.9101
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	2.4	0.9046
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	2.8	0.8971
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	4.2	0.8855
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	4.6	0.8760
AT5G02090			unknown protein		Lus10024357 [exp]	5.7	0.8748
AT5G17280			unknown protein		Lus10028356 [exp]	7.2	0.8481
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	7.7	0.8931
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	8.0	0.8550

Compare expression of checked genes

Lus10039817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.