Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20725 186 / 2e-58 CAAX amino terminal protease family protein (.1) AT1G14270 62 / 2e-11 CAAX amino terminal protease family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018585 [exp] 346 / 5e-121 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1) Lus10036748 [exp] 67 / 8e-13 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4) Lus10037179 [exp] 66 / 9e-13 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G101100 [exp] 218 / 9e-71 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1) Potri.008G147600 [exp] 52 / 5e-08 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10039818 pacid=23165071 polypeptide=Lus10039818 locus=Lus10039818.g ID=Lus10039818.BGIv1.0 annot-version=v1.0 ATGTTCACTCTGCATATTCCATTGGGTATTGGGGGCTTATCTCTAGCTTCCTACGTGTTGCAGCAGCCTGTTCTTGATCCAGATACTGAAACAGTGTCGC TGCTGATCGTCCAGATACTGGAACTTGCAGGAGCTTTGATTCTACTTAGTAGTACTGCTAAACCTGAAAAACACCAGTTGATCAACTTCTTCCTAGCTAA TGAATCAGATAATGGCAGAAACTGGGTGCTGGCATCAGCTTTGGGGTTCGGATTTCTCGTTCTGTTGATCCTCATGACATCATTAGTTGCTGAGCACACA GATAGCTCCATGGATCCAACTGTGAAGGAGATTCTTCAGAGCAACAACACATCAAAAGCCATTCTTTCCACTATATACTGCATCACCACTCCCTTGCTAG AAGAAACAGTCTACAGAAGGTTTCTATTGACATCACTGGCTTCCGGTACAAATTGGCAGCAGGGTGTAATCCTTAGCTCGGCATTCTTCAGCGCTGCTCA CTTCTCTGCTGCGAATTTCGTGCAGTTGTTCGTAGTTGGATGCGTTCTGGGTTGCTGCTACACTTGGACAGGGAAGTTGAGTTCTTCCATTGCAGTACAC GCTCTGTACAATGCCACTATACTGATCATAACCACTTTTGTTCCTTAA
AA sequence Show only first row Show all	>Lus10039818 pacid=23165071 polypeptide=Lus10039818 locus=Lus10039818.g ID=Lus10039818.BGIv1.0 annot-version=v1.0 MFTLHIPLGIGGLSLASYVLQQPVLDPDTETVSLLIVQILELAGALILLSSTAKPEKHQLINFFLANESDNGRNWVLASALGFGFLVLLILMTSLVAEHT DSSMDPTVKEILQSNNTSKAILSTIYCITTPLLEETVYRRFLLTSLASGTNWQQGVILSSAFFSAAHFSAANFVQLFVVGCVLGCCYTWTGKLSSSIAVH ALYNATILIITTFVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20725			CAAX amino terminal protease f...		Lus10039818 [exp]	0	1
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10036049 [exp]	2.6	0.7541
AT1G26180			unknown protein		Lus10031917 [exp]	4.0	0.7728
					Lus10018566 [exp]	9.6	0.7912
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	11.0	0.7577
					Lus10024463 [exp]	11.0	0.7554
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10013838 [exp]	12.4	0.7476
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	19.2	0.7643
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	23.9	0.7574
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10018061 [exp]	25.8	0.7237
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	26.3	0.7499

Compare expression of checked genes

Lus10039818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.