Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001533 [exp] 53 / 1e-08 ND 38 / 0.009 Lus10028675 [exp] 45 / 7e-06 AT1G67190 44 / 1e-04 F-box/RNI-like superfamily protein (.1.2) Lus10029951 [exp] 44 / 1e-05 AT5G53840 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028664 [exp] 44 / 1e-05 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039819 pacid=23165186 polypeptide=Lus10039819 locus=Lus10039819.g ID=Lus10039819.BGIv1.0 annot-version=v1.0 ATGTTCATTGTCTTTCTTTGTGCAGATGTCTTGAACTTGACTGACAAGAAGCTGAACAAGTTGATATCGGAGTTCCCATCTTTGGAGACTCTTGAGTTGG ATAAGCTCTGGCTGCCACCTTCCATGATCGAAATCGATGCTCCTGTGCTAACTAAGTTTGTCTACCATGCCTACGCCGATTGTTTCCCAGCCATATTCTT ATCTAATGGTTGTAAAGAAACAACCTTCACCGTGTCATTCAGTTTCAACAATGGTTTCCATGATTTGAAGCAGTTTCTCGTCAAATTATCACCTCAAATC CGCCTCACTCATGTACATTTCACTGATCCTGCCGGCGGAGACCGGACAGAACTACACACGGTTCGAGCTGGCAGTACATGTGCAAGCAATTCACGGAGAG AGGGTCGAACAACCACTGTAAACTTCCTGTATGCCAATGTTGGCGACATCAACTAA
AA sequence Show only first row Show all	>Lus10039819 pacid=23165186 polypeptide=Lus10039819 locus=Lus10039819.g ID=Lus10039819.BGIv1.0 annot-version=v1.0 MFIVFLCADVLNLTDKKLNKLISEFPSLETLELDKLWLPPSMIEIDAPVLTKFVYHAYADCFPAIFLSNGCKETTFTVSFSFNNGFHDLKQFLVKLSPQI RLTHVHFTDPAGGDRTELHTVRAGSTCASNSRREGRTTTVNFLYANVGDIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039819 [exp]	0	1
					Lus10028391 [exp]	9.2	0.8928
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10022908 [exp]	14.1	0.8986
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	19.8	0.8964
AT5G47020			unknown protein		Lus10007257 [exp]	36.1	0.8608
AT4G30780			unknown protein		Lus10036602 [exp]	36.9	0.8617
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10026457 [exp]	44.0	0.8320
AT1G75810			unknown protein		Lus10034536 [exp]	45.0	0.8801
AT2G27180			unknown protein		Lus10013375 [exp]	45.9	0.8856
AT3G17940			Galactose mutarotase-like supe...		Lus10010976 [exp]	46.5	0.8707
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10030745 [exp]	48.9	0.8334

Compare expression of checked genes

Lus10039819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.