Plant FIBer expression Database

Lus10039820 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28260 438 / 9e-150 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018587
[exp]
789 / 0 AT4G28260 486 / 9e-168 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G133200
[exp]
525 / 0 AT4G28260 508 / 3e-177 unknown protein
PFAM info
Representative CDS sequence
>Lus10039820 pacid=23165326 polypeptide=Lus10039820 locus=Lus10039820.g ID=Lus10039820.BGIv1.0 annot-version=v1.0
ATGGCTGGAAAGTGGGAAGTGGGGCTTCTGCACAAGAGTGGTGGTGTGTGTAGTTTGAAAGACCAACTAGTGAAAGCGACTCTTCAGAGAGTGAGGTCGC
AAGGGCATCCATATGTGGAGCTTCGAACGGACGGGAAGAGGAATATCTTCTTCTGCACTCTGTGTCTTGCGCCGTGCTATAGTGATTCGGTGTTGCTCGA
TCATTTGAAGGGGAATCTACATACTGAAAGGCTGTGTGCTGCTAAACTTACTCTTCTGAAGCCGAACCCTTGGCCATTTAGTGATGGTGTTCATTTCTTT
GACACCTCTAGTGAGAATGGTAAAGGTCAAGGTAATGGGGAGAATGGTAAGAGTAGTAAGTTGATTATGGAGCCTGAGAGGAGAAATTCTGATGATTTTG
CAATTGTTGCTTATGGTGATAAGGATTCGAATCAGACTGGAGGGAGCTCTGATATAGTAATTCCTGGTGTGCTCATTGAGGAAGAGATTTCTGATTTGAA
GGTTAGGTTTATAGGCACTGGACAGATTGCTGCAAGGTTCTGCAAGAAGGATGAGATTAGTAGAATATGGTGTGAATGGTTGGGGGAAAAGGGCAGTGAA
GCCGAACTTCCGGAACACAAATATGCTGTTGTTACATTCTCTTATAACTACAGTTTGGCAAGGAAGGGATTGCTTGATGATGTGAAGTTGCTCCTCGGTT
CTACATCAATGTCATGTGAAGATGGAGTCGAGACTACTAATGGGAAACGAAAGAAATCATTTTCTGATCCTGAAGATGTTAGCAAGTCGTTGAGTCAGAG
TAACAACCAGTATGATTCGTCCGGGGAAGAATCTTCCGCTTCCAATAGTGCTTCATCTAAATTGCTCTTGAACAACCGGTATGATGACGAGCTCCTTCAA
TCTCGGTTTTTGTCCAGCAAGACTGTCAGGCGTGAGCTTAGAAAGCAACAGCGTATAGCAGCTGAAAGATTGTGCGATATATGCCAGCAGAAGATGCTTC
CTGATAAGGATGTTGCAACTCTTTATAACACCAAGACCGGAAAACTTGCTTGTGGCAGTAGAAACACCAATGGGGCATTCCATGTATTCCACACTTCCTG
CCTCATTCTCTGGGTACTACTCTGTGAATTTGAAATGCTTACTACGAAGCCAGCCGGTTCTAAAGGCAGACGGAAATCTCGGAGGAAGAACAATGGTAAG
CAAAACGGAAGAGGTAAAGCGACCGAGAACAATAACATCTTGAAGACCCAAATTAGTTCTGTTTTCTGCCCAGAGTGCCAAGGAACTGGCGTGGATGTTG
ATGGTGATGAGCTTGAGAAACCAGGATTCCCCCTCTCAGAGATGTTCAAATACAAGATGAAAGTGAGCGACGGGCGTCGAGCATGGATGAAAAGCCCCGA
ATTGCTGGAGAATTGCTCCATGGGATTCCACTTCCCTCCCCAGGATGAAGAAACCTTCGAGGAGGAGGTTTCACAGATGAAGTTGCTCCACTTCTACAGA
GCCGATTGCTAG
AA sequence
>Lus10039820 pacid=23165326 polypeptide=Lus10039820 locus=Lus10039820.g ID=Lus10039820.BGIv1.0 annot-version=v1.0
MAGKWEVGLLHKSGGVCSLKDQLVKATLQRVRSQGHPYVELRTDGKRNIFFCTLCLAPCYSDSVLLDHLKGNLHTERLCAAKLTLLKPNPWPFSDGVHFF
DTSSENGKGQGNGENGKSSKLIMEPERRNSDDFAIVAYGDKDSNQTGGSSDIVIPGVLIEEEISDLKVRFIGTGQIAARFCKKDEISRIWCEWLGEKGSE
AELPEHKYAVVTFSYNYSLARKGLLDDVKLLLGSTSMSCEDGVETTNGKRKKSFSDPEDVSKSLSQSNNQYDSSGEESSASNSASSKLLLNNRYDDELLQ
SRFLSSKTVRRELRKQQRIAAERLCDICQQKMLPDKDVATLYNTKTGKLACGSRNTNGAFHVFHTSCLILWVLLCEFEMLTTKPAGSKGRRKSRRKNNGK
QNGRGKATENNNILKTQISSVFCPECQGTGVDVDGDELEKPGFPLSEMFKYKMKVSDGRRAWMKSPELLENCSMGFHFPPQDEETFEEEVSQMKLLHFYR
ADC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28260 unknown protein Lus10039820
[exp]
0 1
AT4G28260 unknown protein Lus10018587
[exp]
1.7 0.9353
AT1G55510 BCDH BETA1, BCD... branched-chain alpha-keto acid... Lus10013401
[exp]
9.2 0.9043
AT5G56290 EMB2790, PEX5, ... EMBRYO DEFECTIVE 2790, ARABIDO... Lus10032883
[exp]
10.2 0.8900
AT1G10600 AMSH2 associated molecule with the S... Lus10030875
[exp]
10.7 0.9001
AT5G27830 unknown protein Lus10029881
[exp]
16.5 0.8992
AT3G14830 unknown protein Lus10005552
[exp]
20.0 0.8765
AT1G55280 Lipase/lipooxygenase, PLAT/LH2... Lus10039181
[exp]
21.5 0.8722
AT4G03020 transducin family protein / WD... Lus10029621
[exp]
22.0 0.8615
AT4G32190 Myosin heavy chain-related pro... Lus10006190
[exp]
22.2 0.8811
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Lus10042101
[exp]
22.2 0.8650

Lus10039820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.