Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28270 101 / 1e-26 ATRMA2 RING membrane-anchor 2 (.1) AT4G03510 99 / 8e-25 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G27470 91 / 8e-22 ATRMA3 RING membrane-anchor 3 (.1) AT1G74990 83 / 5e-20 RING/U-box superfamily protein (.1) AT1G19310 82 / 9e-19 RING/U-box superfamily protein (.1) AT2G23780 77 / 5e-17 RING/U-box superfamily protein (.1) AT3G58030 79 / 6e-17 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 72 / 1e-14 RING/U-box superfamily protein (.1) AT2G44410 67 / 7e-13 RING/U-box superfamily protein (.1) AT2G26350 47 / 6e-06 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018589 [exp] 226 / 4e-75 AT4G03510 154 / 9e-47 RING membrane-anchor 1 (.1.2) Lus10033697 [exp] 145 / 2e-43 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2) Lus10011184 [exp] 88 / 1e-20 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 87 / 1e-20 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10010791 [exp] 84 / 2e-19 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 83 / 3e-19 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10016796 [exp] 81 / 2e-18 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 79 / 9e-18 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10021063 [exp] 74 / 3e-15 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G100800 [exp] 109 / 8e-29 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2) Potri.013G132300 [exp] 106 / 7e-28 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.004G042700 [exp] 101 / 3e-26 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.011G051800 [exp] 100 / 9e-26 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.001G401600 [exp] 91 / 6e-22 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.011G120800 [exp] 86 / 8e-20 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.014G040400 [exp] 84 / 2e-19 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 84 / 2e-19 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 81 / 3e-18 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 79 / 8e-18 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10039821 pacid=23165219 polypeptide=Lus10039821 locus=Lus10039821.g ID=Lus10039821.BGIv1.0 annot-version=v1.0 ATGGAGGAGCTCGATTACAAAAGTTTCAGGGGGAAACAGGGGAGCTCTGTTTCAGAGACTGTAATGGAATCCGGCGAAGAAGAAGAAGGAAGCAAAAGTC CGTCAACTAACGGCTTCGATTGCAACATCTGTTTGGATTCCGTTACGGAACCAGTCGTTACTCTGTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAA ATGGCTGAACTCCGCCGCCGGCGACAACCTCGACGATGATGAAGATTACTATGAATTGCAGTCGCACGGTCGCTGCCCGGTTTGTAAATCAGAGGTTTCG GAATCGGAGTTAATCCCTCTGTTCTCACACGGCCAGACGAGTGACGTTGCCGGGGCGAAATCGGCCGTTCCAAGGAGGCCACCGGCGCCGGTGATGCGGA GGATGAGTCCGTCTCGTCGGCCGGAGACTCTGCGGCGGAGGCGGTACGAGCAGTCGATGTTGCGGGGTGGTGGGTTGGAGCTGTCGGGTCGGGTTCCGAT TCCGGTGGTGGGGATGTTGGGGGAGATTGTTTTCGCCGGGAACTATATGCCGCCGTATGAGATGGACGGCGGTGGCGGCGGAAGCAGTAGTCCACGTGTG AGGAGGCAGATGATGGCGGCGGAGAAATCGCTGAGCAGAGTTTGTTTCTTCCTTGTCTGTTGTGTTTTTATGTGTATTGTTTTGTTCTGA
AA sequence Show only first row Show all	>Lus10039821 pacid=23165219 polypeptide=Lus10039821 locus=Lus10039821.g ID=Lus10039821.BGIv1.0 annot-version=v1.0 MEELDYKSFRGKQGSSVSETVMESGEEEEGSKSPSTNGFDCNICLDSVTEPVVTLCGHLYCWPCIYKWLNSAAGDNLDDDEDYYELQSHGRCPVCKSEVS ESELIPLFSHGQTSDVAGAKSAVPRRPPAPVMRRMSPSRRPETLRRRRYEQSMLRGGGLELSGRVPIPVVGMLGEIVFAGNYMPPYEMDGGGGGSSSPRV RRQMMAAEKSLSRVCFFLVCCVFMCIVLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	0	1
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	3.7	0.9043
					Lus10008547 [exp]	4.8	0.8558
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018589 [exp]	5.8	0.8621
AT3G02750			Protein phosphatase 2C family ...		Lus10021486 [exp]	6.9	0.8826
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	11.6	0.8657
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	12.6	0.8711
AT5G19860			Protein of unknown function, D...		Lus10039187 [exp]	16.1	0.8032
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	16.7	0.8811
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	18.8	0.8816
AT5G62360			Plant invertase/pectin methyle...		Lus10027199 [exp]	19.3	0.8055

Compare expression of checked genes

Lus10039821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.